MmuINT0123211 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25053395-25054057:+
Coord C1 exon
chr2:25053395-25053498
Coord A exon
chr2:25053499-25053670
Coord C2 exon
chr2:25053671-25054057
Length
172 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CATGTCTGATTTGCTTCCAGGAA
3' ss Score
9.89
Exon sequences
Seq C1 exon
ATGAGTCTGACTATCAGACCGAGTATGAGGAGGAACTGCCAGCCATCCCCAAGGAAACGTATGCTGACTTCCAGAGCACTGGGATTGAGCTAGACTCTGACTCG
Seq A exon
GTGAGGTGCTGAACCCTGCCTTGCCTGTGCCGGACTCTGAGGTCCCCAAACAGGGCCTGCCCCTGGTCCCTGACTCTGGGCTAGCTACTGGTTTTCCCACTCCAGGTGATACAGTCTGGGGTCGGGCAAGCCCCCACTTTGCATATCTTGACCATGTCTGATTTGCTTCCAG
Seq C2 exon
GAATATGAGCCTTCGATGTTGCAAGGACCCCCCAGCTTGACTTCCCCAGAACAGTCCCAGGACTCCTTCCCTTGGCTCCCTAATCAAGATGACCAGGGGCCAAGACTGGAACATCCTTCCTGACTGGATAAATAAATAAAACACCTGGGCCTCACCCTTAGACTGAGGCTGCACCCATTCCTTAGAGGCTACTTCAGTTGCCTGACAAGATCAAACTGGATGATATAGCCATCTGGCTTCTTCCAGAGACATGGGCTGTGTTATTGGAGTCGTGGGCCTCTTCACTTCCCCGGCACCCTTGTATCCCCACAGCAGTACTGAGGAGCACGGACGCCTCTGTGAGGCATGGGAAGGTGGGATTGTTGAACTAATAAACGTTAATCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGGAAACGTATGCTGA
R:
TCTAAGGAATGGGTGCAGCCT
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types