HsaINT0128622 @ hg19
Intron Retention
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140354405-140355189:-
Coord C1 exon
chr9:140355086-140355189
Coord A exon
chr9:140354929-140355085
Coord C2 exon
chr9:140354405-140354928
Length
157 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
AACATGCGGTCTGCTTGCAGGAG
3' ss Score
8.27
Exon sequences
Seq C1 exon
ACGAATCTGACTACCAGACGGAGTACGAGGAGGAGCTGCTGGACGTCCCCAGGGATGCATACGCAGACTTCCAGAGCACCTCAGCCCAGCAGGGCTCAGACTTG
Seq A exon
GTGAGGAGCTGGGCATGGTCCCACCTGGTGCCCACAGCTGAGCCTTGGTGCCTGGCCCTGTGCCGGCCACTCCCTCCCTGTGGTCCCACCGGGTTACCAGCGCTGCAGAGCCCCTGCCCTGCCTGGTCCTCACCTGGAACATGCGGTCTGCTTGCAG
Seq C2 exon
GAGGACGAGTCCTCACTGCGGCATCGACACCCCAGTCTGGCTTTCCCAAAACTGTCTGAGGGCTCCTCTGACCAGGACGGGTAGAGGCCTCTGCTAAAGAGCCCGGATGCAGCGTCTTCCGTGGGACTGTCCCCAAGGCTGAGGCTCCTGCCAAGTCCTAGGGGCCTCTGTACCTGCCCTGCTGGAAGCCCTGACTTCCCCGGGGCCCCAGGCTGTGTTAGGGTTCTCTGGGCCTCTTCTTTGTACCAGCAGCCCTGCATACAGGGCCCTGTGAGCCCCCCTGCAGTCCTGTGAGGCCCCTGAAGCTCTGTGAGGCCCCTGAAGCTCTGTGAACCCCCTGCAGCCCTGTGAGGCCCCCCGAAGCCCTGTGAGGCCCCCCGAAGCCCTGTGAACCACCTGCTGCCCTGTGAGGCCCCCAAAGCCCTGTGAACTGCCTGCTGTCCTGTGAACTGCCTGCTGCCCTGTGAGGTGTGGGAGCCCTGATGCTGCCGTGTGATGTTTCAATAAAGGTGGATCTCACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-PNPLA7:NM_152286:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=NA C2=0.940
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACGAGGAGGAGCTGCTG
R:
AGGTACAGAGGCCCCTAGGA
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)