GgaINT0125246 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2098409-2100032:+
Coord C1 exon
chr17:2098409-2098512
Coord A exon
chr17:2098513-2099340
Coord C2 exon
chr17:2099341-2100032
Length
828 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGA
5' ss Score
8.29
3' ss Seq
TGTTCTTTTCCCTCCTTCAGGAT
3' ss Score
13.06
Exon sequences
Seq C1 exon
ATGAGTCAGACTACCAGACTGAGTATGAGGAAGAAGTTCTGGACAACCAGAAGGATGATTATATTCATTTCATAGGGAACCAGGCTGAAGACGACTCTGACTCG
Seq A exon
GTACGAAGTGCCCTGGAAATAGGCTGTTGCTGTGTCTGCTGGCATGAGCTAGAGGTGTCAGGATGACTGGGGATGCTGCTTTCTCCAGCTTGGAAGAGAGGAGGCAAAGAGGGTACCTGCTGTCTGTAGCTGAGTGGTACAGAGAAGGCATCCAAGATGCTCAGGAAAAGGTCAAGAGGTGGCAGACAGGGCTTGGAGTCAGGGAAGTCCTGACTCAACGCGAGGACACTGCACAGTAAGCACACCTGTGTATTGCAAGGGATGTGCAGATGAGTGTGAGATGCTGGAAACTCCATCCTTGCAGATACCCTCCCGAAAAGTAAATTAGGCTCTGAATGACCCAATCTGCATTAAAGTTAGCCCTGTAAAGAGCAGAAAATCATACTGTATCTTCCAGAGGTGTCTTACACCAAAGTTATTGATGCCGTGGGAGCTCAGGTCCACCCTGGGGAAAGCCTGTCCTGCAGCCTCACTTCTTGCGGTGCTGCCTATAGCCCGAGCAGCAGAGCTCCCTCACAGGGGGAAGTCTTCTTACTCCAGGTTGAGTGGCTGGCAGGTTTGAAAGCTGAAGCTGCCTGTTGTGTTGGAGGGAGAGCTTTCCAGTGGGAGCGTGGTGAACGGTTTGGGCAGCTGCCAGTCTGAGGATGTGAGAGGGCTGTGGTGCTGTGAGGAGGGAGCTGCAGTGATGGTGTGGAGGGTTTTGTTTGCTGGGCTGATCTCCGGTGTGCAATGGTTGGTGGACAAAAAAGAGATGGAGGAATGGAGGGCAGATTTTATCCAGCTCAGAAATGGTGCTGAAAAATGAGACTGTTCTTTTCCCTCCTTCAG
Seq C2 exon
GATGAAGATGTACAGATAAGAAAGCGCAAGAATCTCCCAAAGGTGGACTGCCAGGCAAGCAGCACAGGAGAGCCAGCCTAGCACCGAGTGCAAGAGCTGCATCTCGTTTGTATTCACACACACTAAAAAAAGAAAACATCTAGATGAGATTAAGCAAGCTTTTGCCCTTCTCCAGGCAGAGTGTGTGGCATCCAGCTGCCAGCACTGAGCACCAGCAGCCCCTGCCCGAGTTGCTGTGCCATGCAGACCTCCAGGCAGAGCGGCCAGTCCTCTATCACTCGGGAATGGCAGAGTGGGGACGCGTTGGAGACGTGCAGTCAGTGCTGCCTTTGGCTGCTGCATGTTTTACTGACTGGTTTTACTGCAAGGCCCAAAGAATAATTGAACGTCGTCCAATTGAAGGCTCCATGCAGCTGCATTGGAGAGAGGAGGAGATTTGCGGAGCGTGGCGTCAATGCTTACTTTTCATACGAATCAGGTAACTGTAATTAACTCCTCAGTGACTTGCAATCAGGTACTTGTGAGCAATGTTCTGACTGGAGCCACTCTGAATGTATTTAACTTCCAATCTCAAGCCAAGAAATCAATTAATGTGAACACTAGTGTGTATCCTTAAGCCATCAGCAGAACATTTACAGACAAATAATAGTGCTGACCTTTGCCAGGCAACTCTGGAGTCCCTGCTTGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGGCTGAAGACGACTCT
R:
CACTGACTGCACGTCTCCAAC
Band lengths:
350-1178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]