RnoINT0114543 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2261241-2261878:+
Coord C1 exon
chr3:2261241-2261344
Coord A exon
chr3:2261345-2261492
Coord C2 exon
chr3:2261493-2261878
Length
148 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CATGTATGATTTGCTTCCAGGAG
3' ss Score
7.84
Exon sequences
Seq C1 exon
ATGAGTCTGACTATCAGACAGAGTACGAGGAAGAGCTGCCAGCCATCCCCAAGGAAACCTATGCTGACTTCCAGAGCACTGGGATTGAGCTGGACTCTGACTCG
Seq A exon
GTGAGGTGCTGGGCCCCGCCTTGCCTGTGCTCACTCCCAGGTCCCCTGTCCCGACTCTGGGCTAGCTACTTCCCACTCGAGGTGACACAGCCCGGGGTCTGGCAAGCCCCCACTTTGCACACCTTGACCATGTATGATTTGCTTCCAG
Seq C2 exon
GAGTGTGAACCTTCGATGTCGCAAGGGCCCCACAGTTTGACTTCCCCAAAACAGTCCCAGGATTCCTTCCCTTGGCTTCCTAATCAAGATGACCAGGGGCCAAGACTGTATCGTCCTTCCTGACCGGATTAATACAACACAGGACCTGGGCCTCACCCTTAGACTGAGGCTGCACACACTCGTTGGAGGCTACTTCAGTTGCCTGACAAGATCGAACTGGGTGGTACACCCATCTGGTTTCTTACAGGGGCATGGGCTGTGCATTGGAGTCATGGGCCTCTTCTCTTCCCTGGTACCCCTTGTATCCCCACAGCAATACTGAAGAGCACTGAAGCCTCTGTGAGGCTTGGGAGTGTGGGATTGATATATTAATAAACGTCAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCACTGGGATTGAGCTG
R:
CCCAGTTCGATCTTGTCAGGC
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]