BtaINT0115663 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101663717-101664622:+
Coord C1 exon
chr11:101663717-101663830
Coord A exon
chr11:101663831-101664495
Coord C2 exon
chr11:101664496-101664622
Length
665 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
3' ss Seq
CTGGCCTCTCCCTCCCACAGGCG
3' ss Score
12.01
Exon sequences
Seq C1 exon
TGGCGGATGCTGACGGTGAGAAGTGACGATTCGGAACACAAGTACAGCTCCACGCCGCTGGACTGGGTCATGCTGGACACCAACATCGCTTACTGGCTGCACCCCAGGACCAGT
Seq A exon
GTAAGCACAGCATCTGCGGGCAGTCAGCCCATGCCTGAGAGGCCTGTGATGTTAAGAGCAGCCACTGCGTCCGCCCAAGCCCTGGCCTTCCCTGCTGTCCTGACAAAAGCCAAGGGCTTCTTGTTCTCCAAGGGCTCTGGCAGCACGGGGCCCTAGCTCCCCTGAGGTGCTGAGGGGTCAGGTCCCTGCGTGTCTGCAGGGAGGGACACCCGGCTTTGCTGCTGCCATGGCAGCGCATGGTTCCCCTTGCCCAGCCGATGTGGTTTTTAAAACCATCCCACTTGATTCCCCTTCTGGCATCTGGTGTCCAGGCTGGTCAGTGCTCTGCTTCCCTGTCCAGCTAGTCTTCACCTGGTGGGGCAAACGTAGCACGTGGTCTGTACCCGGTAATGACTTAAGCTAGGGGGGTGCGGCCCCCTTTCCCCCCACGGACGTGGGGGGCCGTGGCTTGCTGAGAAACGGGCACTGAGGACCTTCTGCATCAGCACCCCCGTCCCCCTCCTTGTGAGCCGCTCTGCTGTCCAGAAACAACCCCATCCACTCCCGGCTCTGATTCTACTTACAGAGCCGAGCACCTTCACACGTCCGTCCTAGCTGCCAGGGCCGAGGGTGGGTGGCGCCCATGCCTGCCCCAGGCCACACCAACTGGCCTCTCCCTCCCACAG
Seq C2 exon
GCGCAGATCCACCTGCTTGGGAACGTCGTGATCTGGGCCTCCGCCAGCCTTGCCACCCTGGTGTACGCCCTGCTGTTCATCTGGTACCTGCTCAGACGCAGAAGGAGAGTCTGCGACCTCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGCTGACGGTGAGAAG
R:
CTTCAGGGAGGTCGCAGA
Band lengths:
238-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development