MmuINT0124095 @ mm9
Intron Retention
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32107430-32108522:+
Coord C1 exon
chr2:32107430-32107543
Coord A exon
chr2:32107544-32108395
Coord C2 exon
chr2:32108396-32108522
Length
852 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTGACTGCCTGTGATTTCAGGCT
3' ss Score
6.14
Exon sequences
Seq C1 exon
TGGAAGATGCTGACGCTGAAGAATGAGGACTTGGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATCGCCTATTGGCTACATCCCAGGACCAGT
Seq A exon
GTAAGTAAGCATGTGTGGGGCCGTTGGGCTCCTGTAGGTTGCCAGGATTTCTCCATAGCAGAGGCTCAGAAGGTGCTTTTTTTTGTTTGGACACTGGGGCAGTTGAAGGCCAAAGAGCAAGGCCTCCCTTTCCTGCTGCCTGCAGAGGGAAGCCCACTTTTGCCCACTCCTGTCAGAGCATTTTATGTTTCCCCTGTATCACCCAGCCACTAAGCTGGCGGGGTCTGCTTCTGCTTCCTTGAGCCACTGCAGACTGGGATCGAGCGGGGTGGGGTTGCCTGGAAGCAGTGCTGGCGGGGGCTCACTAGGTAAACACCAACCTCCCCAGCCTGCACAGCCAGTGCACCTGAGCCAGTCCCAGGGCTGCCCCGCAGCTGTGTGTGTAACCATGGATTCTCTTTCTGGTCTTTTCTATGACCTTCCTATGAATAGTTTTGTTGTTAAGAGGAATTCCCAGCCAGGCAGACACACTCTTGCAATCTCAGCTCCATAGGTAGACAGGGATGGTACGTTTGAGGCCAGGCTGGGCTGCTTAGGACACAATTTCAAATGAGCTGGGATTTGTGGGTAGATCTGAGCGGCAGTGTGTGCACAGCATGCACAGAGTCCAGTGCCCCAAATCTCCATTACTCCTGATTTTCAGTTTTGACAAACAAGAGAGAGGAAGTTAGTTCTTGTCTAGAAGAGAGGCCCTGGGAACAGGTTCATCCAGATTTGTTCTCAGGCTACGGAGGTCCAGATGCTCTTGTGTGGCTTTGGACTCTGCCAAAGTACATTTGTGCTCTCCTATGGCCACTGCCCTCTGCTTGGAGTGAGGGGCAGGTCGCCAGCCCTGACTGCCTGTGATTTCAG
Seq C2 exon
GCTCAGATCCACTTGCTTGGGAACATTGTGATCTGGACTTCAGCCAGCCTTGCCACAGTGGTCTACACTCTACTCTTCTTCTGGTACCTGCTCCGCCGGCGAAGGAGCATCTGTGACCTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254-Pomt1:NM_145145:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGATGCTGACGCTGAAG
R:
TCAGGGAGGTCACAGATGCTC
Band lengths:
239-1091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: