GgaINT0124526 @ galGal3
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6859629-6860338:+
Coord C1 exon
chr17:6859629-6859742
Coord A exon
chr17:6859743-6860211
Coord C2 exon
chr17:6860212-6860338
Length
469 bp
Sequences
Splice sites
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
3' ss Seq
TACCATCTTCTGTCTGGCAGGCT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
Seq A exon
GTGAGTAGCAGAGTGGGAGTAAGCATGAACCTGGTGAAGAAAGTCTTCAGTTCTGACTTGTCTGAGTGAGAGCAGGGTTGCAGTTCTGTCCAAGGAGTTGGTGCAGGATGGGCTCTTACTGTGATAAGAATTTTTATCACTTCAAAGCAAGCAGCTTTTTCTTGAGAAATGTTTTTTTTTCATTGTTTTTTCTTTCTGTTTTTTTTTTTTTGAAAAAACTGCAGGTTTATAGTTTCTATTTAGAAGATGAGTTGATCTCCAGTAGCATCCTTTAAATGCAATACATTACAAAAGAGACATAAAGCAGCAAAGTTCATCAGCTTTCTGATAAGGAAAGAAAGATCACATTACTAGCCATGTACACTATGAAATTTAATCTAGCAAGTATATAAAATATTGATAATATTTGAACTTACCTAGAACTGCAGTGCATTCCTACTTCTGGCTTATACCATCTTCTGTCTGGCAG
Seq C2 exon
GCTCAGATCCATCTCCTTGGGAATGTTTGCACCTGGGCTTCAGCTAACATCGCTGCTGTGGTCTACACGTGTCTGTCCCTGTGGTACTTGATACGACGAAGAAGAAAAATCTATGATATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005965:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGATACTCACATTGAAAAATGA
R:
TTTTCTTCTTCGTCGTATCAAGTACC
Band lengths:
222-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]