DreINT0117587 @ danRer10
Intron Retention
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50478813-50479138:+
Coord C1 exon
chr5:50478813-50478926
Coord A exon
chr5:50478927-50479011
Coord C2 exon
chr5:50479012-50479138
Length
85 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
TCTTTTCTGATTTGATACAGGCA
3' ss Score
7.87
Exon sequences
Seq C1 exon
TGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAAT
Seq A exon
GTATGTTAACACCATTCTGCCGTTTGTTTCTTGTGTTTGACAGAATGATAACAATACTAATCTGATCTTTTCTGATTTGATACAG
Seq C2 exon
GCACAGATTCACTTTATAGGCAATATTGTTACTTGGACCACTGGAAACATTACACTGGTTGTGTACTGTCTTCTGTTTTTAACATACTTACTAAGACGGAGGAGGAAAGTTGAAGACATTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670:ENSDART00000092002:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCACAATGGACACCAACA
R:
TCTTCAACTTTCCTCCTCCGTCT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]