BtaINT0116344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3976477-3976908:-
Coord C1 exon
chr25:3976805-3976908
Coord A exon
chr25:3976638-3976804
Coord C2 exon
chr25:3976477-3976637
Length
167 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGACTCTGACCTCCCTCCAGCAG
3' ss Score
7.39
Exon sequences
Seq C1 exon
TCACAGCCTGGGCAGCCAGTACCAGAGCCTGCGGCAGAAGGCAGCTGGGAGCAGAAAGGCGCTCCAGGAGCAGCATGAGGTGCTGAAGGCAGAGAGCTCTGGAG
Seq A exon
GTGGGTACCAGGGCCACTGCCTGAGGCTCTGGGGGGACGGGGAAGGGGCCTGGATCCAGGGTCTGTGCAGCAGACGGAACAGCACAGTAGGTGGGGGGGGACACGCTGAGCTGACCCCTAAACACCCCCAGGGCCCCCACGTTCCCCTGACTCTGACCTCCCTCCAG
Seq C2 exon
CAGATGCCTCGGACCTGCAGGGCCGCCAGCTGCTGGCCGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACGGCCATCCTGCGGCCGCCGCTGGAGCAGGGCCGGGCTGTGCAGGACAGCGCCGAGAGGGCCAAGGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178:ENSBTAT00000002822:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAGCCAGTACCAGAG
R:
CTTGAGGTCCTTGGCCCTCTC
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]