HsaINT0130396 @ hg38
Intron Retention
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4893213-4893638:-
Coord C1 exon
chr16:4893541-4893638
Coord A exon
chr16:4893371-4893540
Coord C2 exon
chr16:4893213-4893370
Length
170 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGTCCTCCCTCCCTCCACAGATG
3' ss Score
14.94
Exon sequences
Seq C1 exon
CCTGGGCAGCCAGTACCGGAGCGTGCGGCAGAAGGCAGCTGGGAGCAAACGCACGCTGCAGCAGCGGTATGAGGTGCTGAAGACCGAGAATCCCGGAG
Seq A exon
GTGGGTGCCAGGGCCACTCGCCTGAGGCTCTGGGGGTACCGGGGAGGAGGGGCTGGACCAGGGTCTGTGCTGTGGATGAGACGGCGGGGGGCTGGCTGCCTAGGTCCATCCCTGGGCCTCACACCCCTGGCCCGTTGTCACACCTGCCTGTGTCCTCCCTCCCTCCACAG
Seq C2 exon
ATGCCTCTGACCTACAGGGGCGGCAGCTGCTGGCTGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACAGGGATCCTGCGGCCACCACTGGAGCAAGGCCGGGCTGTGCAGGACAGTGCCGAGCGGGCCAAGGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898:ENST00000345988:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGTACCGGAGCGTG
R:
CTTGAGGTCCTTGGCCCG
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development