RnoINT0116054 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10676854-10677296:+
Coord C1 exon
chr10:10676854-10676951
Coord A exon
chr10:10676952-10677138
Coord C2 exon
chr10:10677139-10677296
Length
187 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACTTGCCCTCCCTATGACAGATG
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCTGGGCAGCCAGTACCGGAGTGTGCGGCAGAAGGCGGCCGGGAGCAAACACGCGCTCCAGCAGCGGCATGAGGTGCTAAGGACAGAGAACCCTGGAG
Seq A exon
GTGAGTATCAGGGTGTCCTGTACAGAGTCAGGGACGTGGAAGGGGGGCTGAACTAGACTGTGCTGTGCATGGGTGACAGGTATCTGATAGAGGACTGAGAGAGGGAAGCCAGGCCAGCCCAACGGCCTGGCTGGCTTTCAGGGCCTCGTGCTCCTTCTCTGTCCCTGACTTGCCCTCCCTATGACAG
Seq C2 exon
ATGCCTCCGATCTTCAGGGGCGACAGCTGCTGGCTGGCTTGGACCAAGTGGCCAGTGACCTGGACCGGCAGGAGAAGGCTATCACGGGGATCCTACGGCCACCCCTTGAGCAGGGACGGGCAATAGAAGATAGTGCTGAGCGGGCCAAGCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCAGTACCGGAGTGT
R:
CTTGGCCCGCTCAGCACTAT
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]