GgaINT0013028 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14029033-14029850:-
Coord C1 exon
chr14:14029753-14029850
Coord A exon
chr14:14029191-14029752
Coord C2 exon
chr14:14029033-14029190
Length
562 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCTCCCTTCTCTTTCCCCAGATG
3' ss Score
11.86
Exon sequences
Seq C1 exon
GATTGCTGATAGCTACGTGGCTGTGAAGGAGAAGACCTCCAACTGCAAGAACGTCCTCCAGCAGCGCTACGAGGGGCTGAAGGCTGACAGCATTGGAG
Seq A exon
GTACAGCTCTGCCAGGGCAGCCCTTTGCCCTACACTGTAATGGTGCCTTGAACTCAGGGGTGTCTCTGCTTTGTCCCCTCCACCAACAACCATGCAATCCTGCCCCACTCCTGTCCTCTCACCCAGGAGATAATGGTGGAACATGGGAGCACAAACACCACTTGGAACCATGAATTCATGGAATGGTCCAGGTTGGCTAAGGTTTTTGAGATCACCAAGTGCAACCATCAGCCTGACCTACAAAGTCCCATCACCAAATCACATCCCCTGGTGCCACATCTCAAACATCTGCATGGATGGGGACACCACCACTGCCCTTGGGGACACACCATTGTCTGAGACACGCTGCCTTTAGCTCTTGCTGGTGGCCAAAGTGTTGGGCTGCTGCTTTGTTGCGGTGAGGGGACATCACTGACAGCTTCTTGTCTCCTAAGAGTCCTGGGGTGCAGTGCTGGAGCAAGCAGGTTGTGGTTACAGCAGGCAGAGAGCGGAGGAGGATGTGGGTTTTGTGCTCAGTGGTGGGACCGAACTGGCTCTAACATGCTCCCTTCTCTTTCCCCAG
Seq C2 exon
ATGCTGCATCAGTTCAGGGCCGCCAGCTTCTGGCAGGGCTGGAGAAAGTGCACAGTGACCTGGACAAGTTGGAGAAAGCAATAACAGCAAACCTCCGTCCGCCACTGGAGCAGAGCCGGGCTGTGCAGGACAGCACCGAGCGCTCCAAGGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGATAGCTACGTGGCTG
R:
CTTCAGGTCCTTGGAGCGCT
Band lengths:
254-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]