DreINT0118304 @ danRer10
Intron Retention
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36325829-36326174:-
Coord C1 exon
chr3:36326077-36326174
Coord A exon
chr3:36325993-36326076
Coord C2 exon
chr3:36325829-36325992
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AAATTTGCTTCTTCCTCCAGGCG
3' ss Score
9.46
Exon sequences
Seq C1 exon
TCTGATAAACCAACATAAAAGCATCAAACAGAAAGTCGCCAGCAGCAAAACTGCACTACAGGCCCGACTGGCAGAGCTCAAGAAGGAGAGTACAGGAG
Seq A exon
GTAAAGGCTTGCCTCTTATGTTATAATAAACTATGCAGAGCTCTTCCAAAGAGAGAAAAACGCTAAATTTGCTTCTTCCTCCAG
Seq C2 exon
GCGCAGATAAGCAAGAGCAGCAGTGCCGTCAGCTGATGGCAGGACTGGATAAAGTTGTCAGCGATCTGGATAAGCAGGAGAAGGCCATTTACTCTCGTGTGCGCCCTCCACTGGAGCAGACGCGTCCTGTGCAAGACAGCGCTGATAGGCTGCAGGACATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043:ENSDART00000157729:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGGCAGAGCTCAAGAAG
R:
CTATCAGCGCTGTCTTGCACA
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]