BtaINT0118620 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101598228-101602387:+
Coord C1 exon
chr11:101598228-101598300
Coord A exon
chr11:101598301-101602243
Coord C2 exon
chr11:101602244-101602387
Length
3943 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTTTCTGATTCTCTTGACAGGTT
3' ss Score
11.6
Exon sequences
Seq C1 exon
AATACAAATTCAGCTCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGCCAGCAGGACACGAAGGTG
Seq A exon
GTAAGTGAGCATGTGGTGTCGCACTGGGTTGTGGGAGGGACGAGTACCTTTTCTGGACTGTCCCAGTTCAGTCCAGGCGGTCTTTAGCCTGAAGCTTTGTGGACTGTCCTTGCTGAGCGAGGTACTGCCTTTGCCTGGGATGGAGGCGCTGATTCTGTGGACCATGTCAGCTCTCTGGTCTCATTGAACATTATCACTGAAGACAGTCCCCCAGGTGTGCGGAGGAGACCCCAGCGCTGGCCCTGCACACCCTGGTTGGCTGAGCTGCTAAAGGAACAAGTCCTCACTCAGCGAGCACCCGCCTCCTCCCTGCCCCACCAGGGAGGGGCTGGCTTGCGGCCCGGGTTTGTAAATCAGCAGCCCTGGGAGCTGAGCTGCTAGCTTTTGGACGGTGGCACCAGAGCAGGCAGAGGTTACATGGGGTTTGTTGCCATAGTGTCCTGCCTGACACAGGGAGACACACTCAGACAGCTATTCAGCCCAGGGATGGCGGAGGGCGCGTGGGAGGAGGAAGTGTCCAGAGCCTTAGGTCAGTGCTGAGTGGCACGCTGAGATGGCCCCAGGGCAGGCCAGGGTACAGTGGCTGCGTGGTGCAGCGGGGGGCTGGGCTGTGGGCCCAAGGTCAGCAGGTGTTTTTGCAAGGAGCCAAACATCCGGATTTCTCTCTGGACTCTCCTGGTTTTCCAGTATTGGGGGTGTGTTTCTAGCACGGCGTGGCACCAGGCAGCGCTCCGAGCTGGAAGGAGAGGGATGGAGGTGTGAGCGGCTCGACCACAGCTGCCCTTTCCTCCATGACCAGCGCAGGCCACCGTCTTTACCCTCAGCCCTGTCCTGGCATTGCCTCTGTCTTCTGCGCATCCCTGCCGGCCGAGGCCTTGCCAGGCCTCACGTGTCATGGTTGAGAGTAGACACCAGCTCCACGCGCCAACTGCCCTGCGCACCTGGCTGCTCTCATGCCCTGAGCACGGGCCCTTCTGGGTTGGGTTGCCATGCAGAACGTCCTCCGTCTCCAGTGGGGATGTCAGTCAGTTGGTGTGGCGGGTACACGCAGCTCCAGCCGGGAGGGCGAGGTGGAGGGAGCCAGACAAGCAGAGAGGGGTGGGTGGGGGGTGTGACAGGGCCTTTCAGACCTACACAAGGTCCTTCCAGAGGCTTTGTGGAGACCGTTCACTGGGCTGTTCACAGTGGGTCTTTGCTCTCTGTATCCTCTATTTCTGTGAAGTTGAAGTATTTTTAAGTAAGTTCAATGAACTTGTTTTTAATGAACAGGAACAATAGAGGTTACTTGAATTGAAGTTGGCACAGCTCTTATGGAGGGCAGCCTGGCACTGCCTATCAGTACCAGCCTGATACCCTCTGACCTGGCAGTTCCTCTGTGGGGCGATCACCCTGCAAGTGATACCTGTTACAGCTGTGTGACCCAAGATCTCACTGCCACATTGTAATCGCAAAAGATTGGAAGCAGCCACTTGAAATGTCCATCAAATTATGGTACTTTAATGAAATGCTGTTTGGCTAGAAGGAAAAAAATGCAGTTTTCTACTGATCTGGCAAGCTTTCCAGGACATATTCTTAAGTGAAAAAAGCGTAGAATAGTACGTAGAGTATTTTATCATTTGTGCAAAAAATCAGGATGAGAGAAAATACATTTCTAGAAAATGTATGTGCATTAAAAAAAAAAATTTCTGGAGGGAAACATAAGAGGAAGGAAGAGAGGGAACAAAACAGAAAAGTGCATATTTTGTGAGGACATTTGACGTAGCTCAGGGCTTCCCTGGTGGCTCAGATAGAAAAGAATCTACCTGGAAAGCTGGAGACCCCAGGTTCAGTCCCTGGGTTGGGAAGATCCGCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAGATCCCATCGACGGAGGAGCCTGGCGGGCTGTAATCCACAGGGTCGCAAAGAGTCCCACACGACTGAGCAACTGACACTTTCACTTTTCTTTGATGTGGAAAGATTGGGTACCTGGGTGGGAGGAGGGTTTCTGTTGATTCTTCTTTAAGGCTTTTTACCTTTGAACCTTTTGATTTACTTATGGAAATAAAACTTGGTTTAGAAAATAATTCTAAAACACAGTAAAATATCCTGTCAACATGTGGTAGCTCGTCTGGGAGGCGGCAGAATCCAGTAGCCCAAGAGGAAAGAAAAGACGTGTGCTGACTATGACCCCTTCTACGCGGGGGTTACAGCCTGTGAGGCTTCCAGGGCTGTGCACGGACATTGTCACGACTTTGGCACTGTTGAGGTTCTTCCGGAGTTGACAGACTCTGCATGTGGAGGGTGGTCCCGGGCCTGTTTCACCTGGACCAGGCCCAGGCCTAGGCCTGCCTGTGTGGTTCAGGCAGAGGCCGGAGGTGCGTGGCCCGCGGGCTCTGCTGCCTGAAGCACCAGCAAGCAGGTCCCTCTGGGGCTGTGCGAGAAGCCCCTGACTGTGCTGTCTCTGCTCCTCCTGGCAGAGAGCAGAGGGCAGGAGGGAGTGCTGGGTGAGCATTACCTTAGGAGTATGACTTTGCTGTGAATGCTGGAGTTCTTCACCTTCTCCTTTTTATCTCTGGAGGGCAAGTTTTATTCATGATTAGAATATCAGCTTCATGATTATCAAGACAGGAAAAAAGTACTAGGCTTTTATTGTTTTTTTGGTTATTATTTTGACTTCACACTGTCTACTTTTTTGTGTGTGTGTGGCCACATGACATGTGAGATCATTCCTTGACCAGGGGTGGAACCCATGCTCCCCTGCAGTGGGAGCTCGGAGTCTTAACCCCTGGACCACCAGGGAAGTCCGTCTGTTCATGCTTTTAAAGTATTGACTTTCATATTTCACTCCTGCCAGTGACCTTTTGATACAGTGAGGCAACTGTGAGAGCAATGGTCCTCCTTCGTGACACCTGGCGATTGTCTCTCAAGTGAATCATTGGTTAGTAATGTGTCTGTTTACCCCCCTGGTGGGTTCATTTGACCCCCCCTGGACCTTTTTACTAAGGGGGATGGTGAACGGATGGCCACCTTGAGCTTCTGCACTAACCCTGCTGCCTCTTTCTCACAAAGTCTGCTGTCGTCAGCAGGTCCTCTGATCAATGATTCCTAGGGACAGACTTGGGTCTGTCTGGGGGTCAAGGTGAGCCACGGTTGGATATTTTACTGTGTAATGTTGCTGCTGTTAAGTTTGCGTGGTGCTGCACACGCGCTGTGTGTTCCCTGAAGGGACCAGTCCCGCTCCAAGCCCTAAAATGCATCACTTTTCAGTACCCGTTCATCGAAGAGATGATCGCAGGGTCCCAGTGCTCCTTGCTCTGAGTGGTAGGAGCGACGCTCAGGAAAGGCTATTTCTCTGCAGGGGTTGATAGTGTTGGGGACTGAATGAAAGAACAAGGAAAGAAGTTGTTCCTGGGATTATAAGAGTTAGAGTGTTTGGCCTTGCAGAACTTGAGGAGCTTTGTAGGAAATGGTTTACTAGAGTGGACAGACAATCCAGGAGGCAGTGTGAGCTGTGAGGTGTTGGGGAGGGGCGTTACCTCCACCCAAAAGCTGCTGACTCCACTGGATAGGTTTCCCCAAAGACCATGCTTGGCTCCCCCTGCCCAGGACCACCGCCGAAAGGACGATACTGCCTTCCTCCAGGAGTGGGAAGGAAGGCTCAGACCACAGTAGCTGCCATACCCAACCCCTGCTGTCTGTGACCAGCTCTGGCAGGGGGCCTGCTGCGGTCTGCAGGCAGCCTCCCCTTGTCATCCTCAGGAAACCCTGGTGCCACTCTGTGGGCACAGAAGGCCAGCACAGACGGCACCGCGGGAAGCAGCGCCCTCAGAGTGGTGGGGCCGCCAGTGTGCTCCAAGGCTGAAGCAGAGAACCATGGACCCCAGTCTCACCTGCCCCCTGAGTCTTTCTGATTCTCTTGACAG
Seq C2 exon
GTTTAAGGGCCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGAGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGTCTTAGATCCGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(12.4=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.1=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development