DreINT0017317 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71268539-71269471:-
Coord C1 exon
chr5:71269408-71269471
Coord A exon
chr5:71268683-71269407
Coord C2 exon
chr5:71268539-71268682
Length
725 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TGTGTGTGATTGTGTTTCAGGTT
3' ss Score
11.44
Exon sequences
Seq C1 exon
AGCACAAGTACAGGTGGACCAAAGCAATGGGCACAGCTCAATGGAAAGGCAGTCGATCAAGATG
Seq A exon
GTAATGATTTTCAGCTCTCTCTGCGGATAATATGCAGATATTCAATGATTCAGCATGTCAAGACTGTGCATGTGTGTTATATTAATATTAGAGCATGACCAATTTTATTTCAGATACCGATATCAGACTAAATAAGTACCGATATCGATGTATATCGGCCGATATTCTTCATATGCAGAGTACAGTATCAGTCAAAAGGACACATACCTATTCATGTGTCTAAACTTGACTAGTACTATAAACAAAATACAGTATAACCATGAATATATATTGATATATGAACATTTTTGCTATGATTTTTAATATATATTTTAAAGTAATTTTTTAGCTCGGCTCAATATTGTGATGATAAAGTAAATCATGAGAAACACTTTATTTTGATGGCATTATTATTACTATTCACAGCTCTTAGTTTTACACATACACAGTACAATATGCATTGAAATGCTTATACTGTAAAAAATCATATTTAAAGCAACACCTTGGAGTATAATTTGTAATGCTAATAATATATAATAAATATAAATGCTATTTGATCTGTGGTGTTTGTGTTATCTGTTGAACTGAACATGTTGTAATGTAATTGTTTCTGTTTGGATCATCTCTTACTGAATTCTGAAGTTATTATTATGTCACGTTTTCACCATTATTTTTACATGAAATATGCATAAGTTGCTGAATGCCAATAAATAAACAAAACTCAAATGTGTGTGATTGTGTTTCAG
Seq C2 exon
GTTTAAAGGTCTCAAGCCGACTGCAGCCCTTCTCTCACGAGGATTTTCCGACGCTGAAGGCAGCAGGAGAACAGGACAAAGTTGGCAAGGAAAGAAGCGTCTTCGATCCGTCGTATGGGCCCGGACCAAGCCTCCGCCCGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(11.0=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.4=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAGTACAGGTGGACCA
R:
CTTGGTCCGGGCCCATACG
Band lengths:
194-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]