GgaINT0123913 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6188418-6191264:+
Coord C1 exon
chr17:6188418-6188490
Coord A exon
chr17:6188491-6191120
Coord C2 exon
chr17:6191121-6191264
Length
2630 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACACTTATTTGTCTGACAGGTT
3' ss Score
9.7
Exon sequences
Seq C1 exon
AGTACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGCCAGCAGGACTAGAAGGTG
Seq A exon
GTGAGTATGATCAACAGAAAGGGAGCTGGATACATGCTTCCCTCAGGCATGAGTTGGGGTGGACTCCATTTCTTTCTGCCCTCCCTGTCTAGACTGGTGCCTAATGGCACACAGCTGTGTTGGTTACAGTGCAGTGAGGCCACATGAGTCCTGTTTTGAATCTGCATAGTCTGTTGGCTGGAATGATGCAACTGCGTCAATTCGTGTCTGTCAAGCGCAAGACACAGCTTGAGCAGAGCATGTCCTATTGCTGCTCTGAACCAGAGTGCCAGTGCCATCTTCCTCAGCCCAGAGCAGTTTTTAAAAAGAAGCAGAAAAGAGAGTGGAGGAGGAAAGGATTTGGATTAGGAGAAAACAGCACATCAAAGACTGGAAATTATGGTGTTTCCATGGCTGGGTAGCATGGGGAGCTTGGCTTAGTGAGGTGCTTGGAATAAGCCTGTAATGGTTAATGTTTGGGGAGGCTGTATGCATTGTCCTTGGGTGAAGGGTCCATGATGGAAATGACATTCCACCTGCTGCAGGATGCACTTGCTTACACCTCAGCTGATGCCTGATGTCTCCTTTGGTAACTGTGCAGCTTACCACTTCTGCTTGACTAAGGATCTTGGAACAATGTTAACATAAATTGGGAGTTTAGTTGTCTTCAGATGCATTTATTTCCACATATAAGGTAATTTCCAGTACTGTCATTAAAACTGTGGTGGAAGTAAGAGCTCAGTTCCAGAGTTTAACGTGGATAGACTGGAAGCCATGAGATACTGAATGAAACTGCAGGTTTTTTTTTTTTTTCAAAGAATTGAGACAGCCACAGATTGCAGTAATGGAGGGGACAAGCTTACCCTAAATTAAATGAATTGATTAGTGAGAGAGTGTTTCTCAGTGGTGAAATGTTAGAACAGAAACTTGTGCTTGCTTGCAGTTGATGGATAATGAAAAGGCTGTTTGGGTAATTGGTACAGTTTTTAGACTGTTGCTCCACAGACCTCCTTCCTGTGCAGTCCTCTTGAAATCTGATCTTCTAACAATGCTTTTAAAGATTTTTTTTTTGAAAACTCATTGTAGGTCACAGTCTTATCAATGTGGAGTTCTCAGCACAGGAAAAGAGTTGCATATGTGACTAAAGAGCAGCTTAACTAGAAGGTGACTGAATTACAGAAGCATCAGAAATCTGGCTGAAAGGATTTGTCAGACCACCCCATTCATGCACCTCTTTTCTGGCAGTGAGCAATTACTTTTCTAGTATTATTGACGGAGAGGTCTTTTCCTTTTGGCTCTTGTAGGTGTCAAAGCTGTTAAATCTTTCTGAGAGGGGCATATCCTAAACTAAGGTGATCTGCTAAATTAGAGATGAACTGCTCTGTGCCTGTTCCTTCCATTTAAGGGGTGTTCTGAAGGAAAGAAAGACAACGGAACCATAAAAGAAACAAACCAGTACTGAAACGCACCAAATGTTTCTCAGCGTGATACTGGCTAGGATTCTAGTGCAAATTGTGAATGCCTGCCCATTAACGGTCATTATATTGTGCAGCCCTACCCACAGGGAAAAACTAATACCGCCTTAGGGATTGGGATGGAGGAGTTAGTCCTGAAAGACAGTAAAATGTTGTTAATGTTCTCATTGTTATTCTAGTTCAGTAGAATGCAGTAGAAAAGATGAACTCTTAACAAGTGTCAGCTGATGTTATACTCAGCAGTTGGCAGTATCTTCTCTGGAAATCTTCAGGAGGGAGATCTTGTGCAGTGTGCAGATTCCAGAAAGTGCAAATGACTTAAGCCAGTCCTCCTATCTTTGCCCTTAAGAGTCAAGGTTAGACTCTTTTGTTAGGTCTTTAGCAGCTTCCATTACTGTTACTTCTAATGAGATAATTCTGAAGGAGGATTAGCCAAGTAACAGGAAGAAACAGTTCTGGAAAAAAGAGTAGTGCAAAATTGCAGACAAATTCTTTTTAGTCAGTGCTAACAAATTTAGGAGAACTGCTTTGTTTTGTTTCCCAGTCACTGCCAGATCTTCGTAAGAGGGAGAGCTTTCATTCTAGGGTAGCTGGTGACTCAGCAAAACAATCTTCCTGTGACAGAAGATGAACCTGGCTTGCTCTGGCTAGTGATCTGCATCTTAAAAATGCTGCAGCCAGGAGGAGAGTTGGGAAATAGCATATTGCACTTAGTCCTTATCTGTGGTCTTTCACCAACTCCATTGCCAGAAACCTTAACAATAGAGTTCCTCAGTGGAGTGAGATTTGAGTAGAAGTCTGAATAGAAATGTCGAATACTTGATGAGAGAATATCATTTATAAGTCATATTGCAGAATTTGTATCTCTGCCTCAGCCTCAATTTTGTGCTGCACAAAAATAATCGAAAGCTGAGAAAGTTTACTCTGACTTTGTTGAACATGAGAGGTTAAATGAAAATCTCAAAGAGTGTGAAAGTATTTGGTGAGGATGTCTGTTGTAGTGTTGATGACGATTTCTGAAAGTGTTTTGGATGTGATCTGAGGTGCAGGTATGGTAGTAATTTGGGTTTAAATTTACTGGGTGCACCGATTCTTGGGGAATGCGTTTTCAGGGTGATCTCGTAAGGGAGTTGGAAGAGTGGAAAGATCGGAGTCCCACACTTATTTGTCTGACAG
Seq C2 exon
GTTCAAGGGCCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGCGAGCAGGACAAGGTTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(12.4=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.1=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]