MmuINT0023968 @ mm10
Intron Retention
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32187481-32191652:+
Coord C1 exon
chr2:32187481-32187553
Coord A exon
chr2:32187554-32191508
Coord C2 exon
chr2:32191509-32191652
Length
3955 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTTCTCTGCCTCTCCTGCAGGTT
3' ss Score
12.14
Exon sequences
Seq C1 exon
AACACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAGTGGAAAGCCAGTCGGACACGAAGGTG
Seq A exon
GTAAGTGGGTGCAGATGGTTTGGATGGGGTGGGTGGGCAGGAGGGATTGGTCCTTTCCTTAGATGAGGGACCCTAGAAGCTGTGGAACCTTTCACAAAAGCTAGTGTTGGTGTTGTTGTGTCCTTTGTGAGTGAAGTTGGCTGCCAATTCTGTGATGGTTGGCCTCATTTGAGTTTAATACTGGTTACTGGAAGTGCTCTTCTAAAGCTGGGCAGAGGAACCCCAACACGGGCCCTGATGTCCTTCAGTCAGCTGCACTGCTCGGGGGTAATTACTGCCAGTGTCATGTTGCCACCAGCTGCTTCTCCCTCACTGGCCTGGCACTAGCCCCGGCTTCAGGCATGCGTGCTGAGGAAGCCAGCAGTATGGGGATGCAGCAGACATCGCAGACATTCGCCCAAAGCCTTTGGAGGATTGGGTGGGGTTGGTTATTGTCAGTATCCTGGCTGGCAGGAAGGTCTGAAAAGGTCAGTCCACTGTGTGGCGACAGAGGTGAAGGGCTAGCGTGCTGCAGGATGAAGTGGTCAGAGTATTTTCAGTGGCTCGGGTAAACTGTGACTAGGTAGCTGTGTGCTTTAGATGAGTCCTGGGCACGTGGCACAGTCCCTGTGGCCCTGGAGGTGAGACCAACGTCAGCAGGTAGATTGCTTGTTTGTTTTAAGATTGATTTATATTTATGTGTATGGATGTTTTGTCTGCATGTGTGTATCTGTCTGCATACCAGAAGAGGTCATCTGATCCTATGAGACTATAGTTCAGATGGTTGTGAGCCAGCATGTGCTGGGAATTGAATTCAGGACCTCTGAAGGAGCAGACAGTGTTCTTAATCACTGAGTCAACTCTCCAGCCCCCAGCAGGTGGTTTTGAGAGCACCATAAATTCAGAAGGCTACCTGAAGTGTTCTGGGTTTTCCGAATTAGCTGGTGTACTTCTGTTCTGATGCACATTGACGACCCAGCTCTGCAACCCTACCCGTGAGGGAGAGTGACAAGTTGACTGATATAGCTCCTAGGTGGAATCTGATTTTGCTCTTTCTGTGGGGACTCAGCCCTGGCAGCTGTTACTCTTGTCCTCTGCCCTGGGGTTACCTTCCCACTCCTATGTGTCCCTGCAAGCCAGGGCTTTGCAACACCTGACTTCTGTTGGACATGGACGGCCAGCGCAGAGGACATGTCTCTCTCCAGATCCGTTGTGGTGGAGAGGAAAGCCCATGTGTTAGAATGTTGTGTCCAGCATCTCCTGGGGCACTGGGCAGTCACAGTGTGCATAGCTTCACTCTGGATAGGTGGCTCAGCAGCACACTACATGAGCCCTTTGCTGGTGGAGGTGAGGTGACAGATGGGCAGCAAGGAGGGCAGGCAACTGAGGTCCTCAGAAAGGCCGGTGGGGCAGCGACTGCGCTGTCAGCGGAGACCCGGCGGTCTGCGTTTTCTATGAAGGTTAAGTGGTGAGTGTGTGTGCATGCTTCCAGACTCATCTGGGAATTCCGTGCTGCATGTAGGCAAGTAGTGTGTGTGCATATGTGTGCATGTGAAGGTCAGAGGATGGTTTTGCTTGTCTTCCCTCATGAATGGTAAACCTCATTTTTTGCAACAAGTCCTCTGGCTTGAAGCTCACTGTCTTAAATTACTTTCTGTTGCTGTGACATAACACTGTGACCAAAAGTAACTTGGAGAGGAAACGTTTATTTTAGCTCACAGCCCATCATGAGTAGAAATCTGTACAGGAACTCCAGGCTGGACTCCTATCTGGAGGCAGGAACTGATGGGGAAGTCACAGAGGGATGCTGCTTACTGGCTCACTCCCCTGGTGATTCAGTTTGCTTTTTTATATATGATCTGCCCAGGGAGAACACTGCCTCTGGTTGGCTGGGCCCCAAACATCAATCAGTAACCAAGAGAATGCCCCACAGAGGTGCCTGTAATCGTATGGAGGCATTTCCTAATTACGACTTCCTCTTCTGAGTATAAGTGTATGTCATGGTGCTTGGTACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAATGTAGGTGCACGTGTGGCACGTTGCTCATATGTGGTGGTCAGAGGTCAGCTTTCAGAAGTCAGTTCTCACCTTCCCCCTTGTTAAATGGGGATCTCATTTCTTGTCATTGCATCCATGCACCAAGTCCTCTGGCCCAGGACTCTCTGGATCATGGAGTCCACTTCCTAGGGAGTGCTAAGACTACAGATCCCTGCCCTTTCGCCCAGCTTTTCACATAGATGCCAGGGATCTTAGCTCGATTCATTAGGCTTGCATTGTAAGTGCTAGGACAGAGATCAAAGGTGTGTGCCCTTCCCCCTGGTGTGGCCTGCTCTGATTACCTTGCTTGCCAGTATTGGGTGACAAATGTAAAAGTGCTGAAATCTGAGGGATACTAGTGTGCAGGTGTAGGGTTGAGTTACCTGTCATAGTTTTGTTTTTTGTTGCTGTGATAAAAGGAAAGAAGGGAGGGCTTATTTAATTTACAATTCTAGTTTTTGGTCCATCATTATTGGGAAGTGAAAATGTCAGGTATTTTAGCAGTCAATGTCAAAATTGGAGAGCAATGAATGAATGCAAGCATGCATACTAGTGTTCAGCTTGCTTTCCACTCTTAAACATCCACAACCCTATGCCTGGGGAATGGTGCTGCCCACAGTGGGTGGGAACTCCCACCCAATTAACATTATCAAAAGTATCCCCCACAGACATCCCCATTAGCAATATGATCCAAACAGTCCTTCCTTAAGAGTCCTTTCCCAGGTGACTATAGAGCAGTGGTTCTCACCTTCCTAATGCCATGATTTTATTTTTAATACATGTAGTGATCCCCCAGCCATAAAATTATTTTCATTGCTACTTTTTTTGTTGTTGTTTTTTGGTTTTTGGTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGCAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCGTGCTCCACCATGCTGGCTCATTGCTACTTTATAACTGTGATTTTGCTACTGTTATGAATCATGTTGTAAATGTCTGATGTGACCCCTGGGAAAGGCTTGTTCAGCCCTCAAAGCTGGAGAGCCTCTTTTCTAGAGTGTCAGGTGACAGCTAACACCAGCCACCTACCTTTTCTCAGTTTTGCCAGTAGAGGGTGAGTTTGCCCGATGCTGTCACTTGGCAGGCTGTTCTCACCCAGCCCTTTAACTGACTGTGGGAGCAAGCAGGCCACTGCTGCAGTGACCTGCCCATTTCCCTGTGCATAGCAGTTCCAGTCAGCAGGTGCCTATGTATTGTACTGAAAACCTAGGGGTGTGGCTATAACAGGGCAGTGGTATCCCTCAGTTCAGTAGTGTGGTACACAGCATGGGCTGAGAGAGCACTAGTCCTTAAAGGCCATTCTCCTCTGTTAATCCAGGAAGAGATGGGATCTGTGTGTCAGGAGTGGAGTTACAATGTTAAAACAGGGCTGTTCCTTCCAAGGGGGTTCTGGTTGAGCAGTGAGTGACTGCTGAAGAGAGAAATGGTCTTGGGGTTACATCAGGACCACACTTGGCTTGGCAGGGCTGGAGAAGGTTGGGAGGTGAGTCTCAGAACTCACTGGCCACAGCTTTGTGGGGTGTCTGATGCTGCCCCTCATGAAGCAGTCTTACTACCCTAAGCAGACGCCAAGTACCCGGTGATTTCCTGTCCCCTTATCCTGTGTGAGCACCTGCCAGCTCCTGGGAACAGCTAAGGGAGTCGTCACTGCCTGGCAGTACAGATGCCCACCTAGCCAGGCCACATGGGGCTAGGAAAGCAGCGACACTTGGCTGTCTTACCAGCTCCCTCTGTCTTCTCTGCCTCTCCTGCAG
Seq C2 exon
GTTTAAGGGGCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGAGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262:ENSMUST00000036691:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(12.4=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.1=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types