MmuINT0023968 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32043001-32047172:+
Coord C1 exon
chr2:32043001-32043073
Coord A exon
chr2:32043074-32047028
Coord C2 exon
chr2:32047029-32047172
Length
3955 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTTCTCTGCCTCTCCTGCAGGTT
3' ss Score
12.14
Exon sequences
Seq C1 exon
AACACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAGTGGAAAGCCAGTCGGACACGAAGGTG
Seq A exon
GTAAGTGGGTGCAGATGGTTTGGATGGGGTGGGTGGGCAGGAGGGATTGGTCCTTTCCTTAGATGAGGGACCCTAGAAGCTGTGGAACCTTTCACAAAAGCTAGTGTTGGTGTTGTTGTGTCCTTTGTGAGTGAAGTTGGCTGCCAATTCTGTGATGGTTGGCCTCATTTGAGTTTAATACTGGTTACTGGAAGTGCTCTTCTAAAGCTGGGCAGAGGAACCCCAACACGGGCCCTGATGTCCTTCAGTCAGCTGCACTGCTCGGGGGTAATTACTGCCAGTGTCATGTTGCCACCAGCTGCTTCTCCCTCACTGGCCTGGCACTAGCCCCGGCTTCAGGCATGCGTGCTGAGGAAGCCAGCAGTATGGGGATGCAGCAGACATCGCAGACATTCGCCCAAAGCCTTTGGAGGATTGGGTGGGGTTGGTTATTGTCAGTATCCTGGCTGGCAGGAAGGTCTGAAAAGGTCAGTCCACTGTGTGGCGACAGAGGTGAAGGGCTAGCGTGCTGCAGGATGAAGTGGTCAGAGTATTTTCAGTGGCTCGGGTAAACTGTGACTAGGTAGCTGTGTGCTTTAGATGAGTCCTGGGCACGTGGCACAGTCCCTGTGGCCCTGGAGGTGAGACCAACGTCAGCAGGTAGATTGCTTGTTTGTTTTAAGATTGATTTATATTTATGTGTATGGATGTTTTGTCTGCATGTGTGTATCTGTCTGCATACCAGAAGAGGTCATCTGATCCTATGAGACTATAGTTCAGATGGTTGTGAGCCAGCATGTGCTGGGAATTGAATTCAGGACCTCTGAAGGAGCAGACAGTGTTCTTAATCACTGAGTCAACTCTCCAGCCCCCAGCAGGTGGTTTTGAGAGCACCATAAATTCAGAAGGCTACCTGAAGTGTTCTGGGTTTTCCGAATTAGCTGGTGTACTTCTGTTCTGATGCACATTGACGACCCAGCTCTGCAACCCTACCCGTGAGGGAGAGTGACAAGTTGACTGATATAGCTCCTAGGTGGAATCTGATTTTGCTCTTTCTGTGGGGACTCAGCCCTGGCAGCTGTTACTCTTGTCCTCTGCCCTGGGGTTACCTTCCCACTCCTATGTGTCCCTGCAAGCCAGGGCTTTGCAACACCTGACTTCTGTTGGACATGGACGGCCAGCGCAGAGGACATGTCTCTCTCCAGATCCGTTGTGGTGGAGAGGAAAGCCCATGTGTTAGAATGTTGTGTCCAGCATCTCCTGGGGCACTGGGCAGTCACAGTGTGCATAGCTTCACTCTGGATAGGTGGCTCAGCAGCACACTACATGAGCCCTTTGCTGGTGGAGGTGAGGTGACAGATGGGCAGCAAGGAGGGCAGGCAACTGAGGTCCTCAGAAAGGCCGGTGGGGCAGCGACTGCGCTGTCAGCGGAGACCCGGCGGTCTGCGTTTTCTATGAAGGTTAAGTGGTGAGTGTGTGTGCATGCTTCCAGACTCATCTGGGAATTCCGTGCTGCATGTAGGCAAGTAGTGTGTGTGCATATGTGTGCATGTGAAGGTCAGAGGATGGTTTTGCTTGTCTTCCCTCATGAATGGTAAACCTCATTTTTTGCAACAAGTCCTCTGGCTTGAAGCTCACTGTCTTAAATTACTTTCTGTTGCTGTGACATAACACTGTGACCAAAAGTAACTTGGAGAGGAAACGTTTATTTTAGCTCACAGCCCATCATGAGTAGAAATCTGTACAGGAACTCCAGGCTGGACTCCTATCTGGAGGCAGGAACTGATGGGGAAGTCACAGAGGGATGCTGCTTACTGGCTCACTCCCCTGGTGATTCAGTTTGCTTTTTTATATATGATCTGCCCAGGGAGAACACTGCCTCTGGTTGGCTGGGCCCCAAACATCAATCAGTAACCAAGAGAATGCCCCACAGAGGTGCCTGTAATCGTATGGAGGCATTTCCTAATTACGACTTCCTCTTCTGAGTATAAGTGTATGTCATGGTGCTTGGTACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAATGTAGGTGCACGTGTGGCACGTTGCTCATATGTGGTGGTCAGAGGTCAGCTTTCAGAAGTCAGTTCTCACCTTCCCCCTTGTTAAATGGGGATCTCATTTCTTGTCATTGCATCCATGCACCAAGTCCTCTGGCCCAGGACTCTCTGGATCATGGAGTCCACTTCCTAGGGAGTGCTAAGACTACAGATCCCTGCCCTTTCGCCCAGCTTTTCACATAGATGCCAGGGATCTTAGCTCGATTCATTAGGCTTGCATTGTAAGTGCTAGGACAGAGATCAAAGGTGTGTGCCCTTCCCCCTGGTGTGGCCTGCTCTGATTACCTTGCTTGCCAGTATTGGGTGACAAATGTAAAAGTGCTGAAATCTGAGGGATACTAGTGTGCAGGTGTAGGGTTGAGTTACCTGTCATAGTTTTGTTTTTTGTTGCTGTGATAAAAGGAAAGAAGGGAGGGCTTATTTAATTTACAATTCTAGTTTTTGGTCCATCATTATTGGGAAGTGAAAATGTCAGGTATTTTAGCAGTCAATGTCAAAATTGGAGAGCAATGAATGAATGCAAGCATGCATACTAGTGTTCAGCTTGCTTTCCACTCTTAAACATCCACAACCCTATGCCTGGGGAATGGTGCTGCCCACAGTGGGTGGGAACTCCCACCCAATTAACATTATCAAAAGTATCCCCCACAGACATCCCCATTAGCAATATGATCCAAACAGTCCTTCCTTAAGAGTCCTTTCCCAGGTGACTATAGAGCAGTGGTTCTCACCTTCCTAATGCCATGATTTTATTTTTAATACATGTAGTGATCCCCCAGCCATAAAATTATTTTCATTGCTACTTTTTTTGTTGTTGTTTTTTGGTTTTTGGTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGCAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCGTGCTCCACCATGCTGGCTCATTGCTACTTTATAACTGTGATTTTGCTACTGTTATGAATCATGTTGTAAATGTCTGATGTGACCCCTGGGAAAGGCTTGTTCAGCCCTCAAAGCTGGAGAGCCTCTTTTCTAGAGTGTCAGGTGACAGCTAACACCAGCCACCTACCTTTTCTCAGTTTTGCCAGTAGAGGGTGAGTTTGCCCGATGCTGTCACTTGGCAGGCTGTTCTCACCCAGCCCTTTAACTGACTGTGGGAGCAAGCAGGCCACTGCTGCAGTGACCTGCCCATTTCCCTGTGCATAGCAGTTCCAGTCAGCAGGTGCCTATGTATTGTACTGAAAACCTAGGGGTGTGGCTATAACAGGGCAGTGGTATCCCTCAGTTCAGTAGTGTGGTACACAGCATGGGCTGAGAGAGCACTAGTCCTTAAAGGCCATTCTCCTCTGTTAATCCAGGAAGAGATGGGATCTGTGTGTCAGGAGTGGAGTTACAATGTTAAAACAGGGCTGTTCCTTCCAAGGGGGTTCTGGTTGAGCAGTGAGTGACTGCTGAAGAGAGAAATGGTCTTGGGGTTACATCAGGACCACACTTGGCTTGGCAGGGCTGGAGAAGGTTGGGAGGTGAGTCTCAGAACTCACTGGCCACAGCTTTGTGGGGTGTCTGATGCTGCCCCTCATGAAGCAGTCTTACTACCCTAAGCAGACGCCAAGTACCCGGTGATTTCCTGTCCCCTTATCCTGTGTGAGCACCTGCCAGCTCCTGGGAACAGCTAAGGGAGTCGTCACTGCCTGGCAGTACAGATGCCCACCTAGCCAGGCCACATGGGGCTAGGAAAGCAGCGACACTTGGCTGTCTTACCAGCTCCCTCTGTCTTCTCTGCCTCTCCTGCAG
Seq C2 exon
GTTTAAGGGGCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGAGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_001159634:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: