BtaINT0118698 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:8017471-8020932:+
Coord C1 exon
chr6:8017471-8017751
Coord A exon
chr6:8017752-8020235
Coord C2 exon
chr6:8020236-8020932
Length
2484 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CAGTTGTTTGGCCCGCATAGGAC
3' ss Score
3.99
Exon sequences
Seq C1 exon
GTACGGTAACAGTACTAGGAACTACGTGGTTCGGGTTGGGGATTATCACACGCTGGTGCCGGAGGAGTTCGAAGAAGAGATCAGAGTTGAGCAGATCGTAACCCACCGGCTCTACCGCCCGCACAGCAATGACTATGACATCGCCCTGGTTAGGTTACAAGGACCAGAGGAGCAGTGTGCCAGGCTCAGCAGCCACGTTCTGCCTGCCTGCTTGCCGCGCTGGAGAGAGAGGCCACAGAAGAGAGCACACAACTGCTACGTAACGGGATGGGGAGACACAG
Seq A exon
GTAACAGAAAACCCAAAGAAACAGTGAAGATACGGCCACCTTCTTGCGTCTGGATTACCCATTTGGGTGTGCAGTGGGTTGTTGTTCAGTCACTAAGTCATGTCATTCTTTCCGACCCCATGGACTGCAGCACGCCAGGCTTCTGTTCTTCACCGTCTCCTGGAGTTTGCTTAAACTCATGTCCATTGAGTTGGTGATACCATCCAACCGTCATCTACTGTTGCCCCTTTCTCCTCCCACCTTCAGTCTTTCTCAGCACCAGGGTCATTTCCAGTGAGTCGGCTCTGCATCAGTGGCCAAAGTGTTGGAGCTTCAGTTTCAGCATCAGTACCCCATTCAGTACAGTGGGTAGCAACATCTTAAAAGGGGGTTTAGGCTTAGTTGTTTGGAAATTCCACCAAGTGTGAGATGCTTGCATGCAACTTGGATTCCTATCCTGAGGGTACTATGGTTTCCATTAGGACGTAGACGCTACCTTAGGACTTGGGCCTGGCTGTCTCTGTTTCAAAGTTTTCCCAGATGACTTTGATGCAGCTACCCCAGCAAATGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGGATTCCATGGACAAAGGAGCCTAGTGGGCCACAGTCCATGGGGTCGCAGAGTCCGACACTACTGGGAGACTCACACACACACAACCCAGAAAGGGCTTTGGTATTAGTTTTTTTTTTTTTTGTAATGGAGCCCTTTATCAAACTAAATCTTAACGGAGATTTTTAAATAAAGAACAGCCAAAAAACAAAACAAAGCTGCTGAGGTTCAAGAGGAGGGATCCACCCTACTTGGGTTTCTCCTTCACCACTCTCCCCTTCCTATTCTTCCCACAGATAGTGTTCAGCTTATGCTCTTCTCAGGCAAACAGCTTTCTGTATTGTCTTGCTAGACTTAACATCAGCTAGTGCTTTCTCAGGAGCTCAGGGGTAAAGAATCCCCCTGCTAATGCAGGAGATGTGGGTTTGATTCCTGTGTCAGGAATATCCCCTGGAGAAGTAAATGACAACACACTTCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGTGCTTGGTGGGCTATGGTCCATGGAGTCACAAAAAATGGGACATGACGTCCTAAACAACAACAGTGCTTGCTCAGGATAGTCTTTGAAACAGAACTCTTAAGTCTCGCCTGGATCAGGTACTCGATTCACAAATGACTGTTGAATAAGGAGAAACGATTGGGCTAACTACTCTGCATTAAAAGTAATTAACACTGTTAACTGTACTCTTGAAAACAGCATCTAATACATATTTCTACAGGTGATGATTTCAATAAGGTTTTACCTAGTATAAATTTATTATATTTCAGTGTTCATTTTATCCATTAAATCTTGGCTTTAGACTGGGAGTCCATGGGGTCGCGAAGAGTCAGAAAAGACTTAGCAAGTAACACTTTCACTTTCTTTAGATTCAACACTATTTCATAGCAGCAAAATGTAGAAACACCTGTAGCAGATATAGAATACTGGGACCAATCCTGAGAGAAGCCATAAAAAATGGAAACATTTCCTGGATGATGTAATAAAATCAGGTCAGAGTAAATGCTTTCTCAAGGAAACACTATGCCGAGCTGTGATGCAAGTCGAAGATTAAAGTGTAGGTGTTAAAATTACTTCTTCAGGGAAAGTTCAGTCATCTTCCTTATGACACTACATCTAAACAGAGGTAACACAGGAAGTAAATTTCACCAAATGATTTTATTATGAATGAATCACTGCAGTTGAGTATACTGGACAATAATGGTGGAATTTAGATGCAAGTAAAGGCTATCATGGAGAACCTACCAATTATGCATTTTAGCCACTAGACAAAGATGAGTGGCTTACTAGTAAATACAGTACCTTAACATCAAGAGGTTAAACTTATGGCTGTCTGTATATAAAGTTGTTTCTGAATCATCTTCATGAAATATTGAGGATAGTAATTGCCAGTTGACGTAGATGAGTTTTAGAGCGATGGATATGCCAATACGGAACTAGCACGACTGCACCCTCAGCATTTTAATACAGAGAATTTAAATTCTAAAGCCTACACAAATGTGCTTTCCGTAGGTTACCCTTTTCTAGCAGGCAAATCCATAAATGTTACTCAGCTATTCTTCAAAAACTTCAGTACTGAGAAACAGATCAGTGAAGGATTAGAGTATGGTTAACTGCTCACTCCAGTACTCTTGCCTGCAAAATTCCATGGATGGAGGAGCATGGTGGGCTACAGTCCATGGGTTCGTAAAGAGTCAGACACAACTGAGTGACTTCACTTCAACTGCAAACACTGAAGAAAAAAACCATTTATAGTTATCACTCATTTAAATTACACTAATGCCACAATAGGGCTTCTATCTTCAAGACTCCTAAATGTTCATTTAACTGTTAAATATAGCTCTAAGATCTTTAGCTGGAATCTAATTCAGTTGTTTGGCCCGCATAG
Seq C2 exon
GACCAGCCTACTCAAGAACTCTGCAACAAGGAGCCATCCCCTTACTTCCCAAGAGGTTTTGTGAACATCGTTATAAGGGTCGGTTTACACGAAGGATGCTCTGTGCCGGAAACCTCCATGAACACAAACGTGTGGACAGTTGCCAAGGAGACAGCGGAGGACCGCTCGTGTGTGAACGACTGGGAGAGCGCTGGGTTGTGTATGGGGTGACCTCCTGGGGATACGGCTGTGGAGTCAAGGATTCCCCTGGTGTTTATACTGAAGTCTCAGCCTTTGTACCTTGGATAAAAAGGGTCACCAAACTGTAATCCTTCATGGAAATGTCAAGAAGATAGTATTTAAAGAATATGTTGGAAAATTTCCAACATTGGCATTTAGCCAGAGATGCCAACTAATGGGAGAGGAGATCTTTGTTTTTGTGTTCTGTGTTGATAAAAGTGATGTACCTCTTTGCTGCTTGAGAATGATGTGAACATTCTGGTTACAGATACCTCAGTGTAGTAATGACTTCTTATTTAGCACCGTTGCCTACCCAAATTGGTTTTACAGGAGACTACATTCGTTATTCTGTCTTGTCTCAATTTCTCAGCATTCTCCAGAGATTATTGTATATTGATTGTGCAATAAGGCTGTTTTTACATGTATTTGGATTGAGAACTCCTTTGTAACTTAATCAGTATGGTATATATTCATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705:ENSBTAT00000027594:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]