MmuINT0127396 @ mm10
Intron Retention
Gene
ENSMUSG00000027978 | Prss12
Description
protease, serine 12 neurotrypsin (motopsin) [Source:MGI Symbol;Acc:MGI:1100881]
Coordinates
chr3:123505278-123506597:+
Coord C1 exon
chr3:123505278-123505558
Coord A exon
chr3:123505559-123506219
Coord C2 exon
chr3:123506220-123506597
Length
661 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCTTCTTTTGGTCTGAGCAGGTC
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTACGGAAACAACTCGAGGAGCTATGCAGTTCGAGTTGGGGATTATCATACTCTGGTACCAGAGGAGTTTGAACAAGAAATAGGGGTTCAACAGATTGTGATTCACAGGAACTACAGGCCAGACAGAAGCGACTATGACATTGCCCTGGTTAGATTGCAAGGACCAGGGGAGCAATGTGCCAGACTAAGCACCCACGTTTTGCCAGCCTGTTTACCTCTATGGAGAGAGAGGCCACAGAAAACAGCCTCCAACTGTCACATAACAGGATGGGGAGACACAG
Seq A exon
GTAATTATAAAAACAAAGAAACAATCGAAGAAAACTTGACAGCATTTGGTCTGTTCATGTTAGGATGTGCAATGGTATGACCTTAGATCAGTGGTTCTCCATTGGTGGGTCACCTAAGACCATTGGGAAACACAGTTATAACAGTAGCAAAATTCGTTATGAGGTAACAATAAAAATAATTTTATGGTTGGGGGTCACCACCATGGGAGGAACTGTATTAAAGGATCGCAACATTAGGATTGAGAATCACGGCCTTAGGTGGGCTTAAGCTTAGATGCTTGAAGTCTGCCAAGTGTGAAATGTATACACACAGCCTACCTAGATTCACACCCTGGACTGTTGGTTTCCTACACTGTTGGTTCTAATTCCAAATTTTAGCACTAGCTGATGGAATTCAATTGCTAGGTGTACACTTATGTTTTTCCACAAATGACCTGACTAGATAAATGACACGTCATGTTTGTATGTGAAACTGTACGCAGTTTAATTCTGAAACATCCAATACTAGAGCCTTCTGCTACACAGCTAGCACCATAGCTACTTCTAAGTTAACAGCCATTTTGAAATGCCTTTGAAGGCATTATAAGACTACTAAACTGCTAAATGTGATCATTAGCTGAAATCCCATTGACTAACGCCAGCCTTCTTTTGGTCTGAGCAG
Seq C2 exon
GTCGTGCCTACTCAAGAACTCTACAACAAGCTGCTGTGCCTCTGTTACCCAAGAGGTTTTGTAAAGAGAGGTACAAGGGACTATTTACTGGGAGAATGCTCTGTGCTGGGAACCTCCAAGAAGACAACCGTGTGGACAGCTGCCAGGGAGACAGTGGAGGACCACTCATGTGTGAAAAGCCTGATGAGTCCTGGGTTGTGTATGGGGTGACTTCCTGGGGGTATGGATGTGGAGTCAAAGACACTCCTGGAGTTTATACCAGAGTCCCCGCCTTTGTACCTTGGATAAAAAGTGTCACCAGTCTGTAACTTATGGAAAGCTCAAGAAAATAGTAAAACAGTAACCATTCAGTCTTCATACTTGGCACCATGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027978:ENSMUST00000029603:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGGTTAGATTGCAAGG
R:
AGTCACCCCATACACAACCCA
Band lengths:
352-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types