RnoINT0118661 @ rn6
Intron Retention
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227716600-227717884:+
Coord C1 exon
chr2:227716600-227716880
Coord A exon
chr2:227716881-227717545
Coord C2 exon
chr2:227717546-227717884
Length
665 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GTCTTTTTTGCTCTGAGCAGGTC
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTACGGTAACAACTCGAGGAGTTATGCCGTCCGAGTTGGCGATTATCATACTTTGGTTCCCGAGGAGTTTGAACAAGAAATAGGGGTCCAACAGATTGTGATTCACAGGAACTATCGGCCAGACAGCAGCGACTATGACATCGCCCTGGTCAGATTACAAGGATCAGGGGAGCAATGTGCCAGACTAAGCACCCACGTTTTGCCAGCCTGTTTACCTCTATGGAGAGAAAGGCCACAGAAAACAGCCTCCAACTGTCACATAACAGGATGGGGAGACACAG
Seq A exon
GTAATTATAAAAACAAAGAAACAAACTAGGAAAACCTGACAGCTTCCGCTCTGTTCATGCTACGATATGCAAGGGTAAGACCTCAGATCAGTGGTTCTCCATTGGTGGGTCACCTAAGACCAATTGGAAAACACATATTTACGACTCGTAATAGCAGCAAAACTAGTTATTAAGTAGCAACAAAAATGATTTTACGGTTGAGGGTCTACCACACGAGGAACTGTATTAAAGGGTGGCACCATTAGAATTGAGCCTCAGATGGGCTCAAGCTTAGATGATAGAAGTTTGCCAAGTGTGAACTGTATACACACAGCCTAGATTTACATCCTGGACTTTGGGTTTCCTACACTGTTGGTTCTAACTCCCAAATTTTAGCACAAGCTAATGGAATTCAATTGCCAGGTGTACATTTAAGTTTTTCTACACATGACCTACCAGGAAGCAGACTATATACATGCTGCTTGGTATGCCTCAAGTCTTTCTGTATCATCCCATTTCACTTGTGCTGCCTGGCTACCACCTTAGCACCTTTATAAGCAGCAGCCATTTTGATATGCTTCCAATACTTCAGCAATTAAAGATTACTAGACTGCTAAGTATGACTATTAGCGGAAATCCCATTGACTACTTCTTCTAGTCTAACTAGTCTTTTTTGCTCTGAGCAG
Seq C2 exon
GTCGTGCTTACTCAAGAACTCTACAACAAGCAGCTGTGCCTTTGTTACCCAAGAGGTTTTGTAAGGAACGTTACAAGGGACTGTTTACTGGGAGAATGCTCTGTGCTGGAAACCTCCAAGAAGACAACCGTGTGGACAGCTGCCAGGGAGACAGCGGAGGACCACTTATGTGTGAAAAGCCCGATGAAACTTGGGTTGTGTATGGGGTGACTTCCTGGGGGTATGGATGCGGAATCAAAGACACTCCAGGAGTTTATACCAGAGTCCCTGCCTTTGTACCTTGGATAAAAAGTGTTACGAGTCTGTAATTTATGGGAAGCTCAAGAAAAAGAGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353:ENSRNOT00000021116:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGACATCGCCCTGGTCA
R:
CAACCCAAGTTTCATCGGGCT
Band lengths:
348-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]