HsaINT0132927 @ hg38
Intron Retention
Gene
ENSG00000164099 | PRSS12
Description
protease, serine 12 [Source:HGNC Symbol;Acc:HGNC:9477]
Coordinates
chr4:118280038-118283111:-
Coord C1 exon
chr4:118282831-118283111
Coord A exon
chr4:118282244-118282830
Coord C2 exon
chr4:118280038-118282243
Length
587 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAGATGTTTGGTCTGAGTAGGAC
3' ss Score
2.34
Exon sequences
Seq C1 exon
GTATGGCAACAGCACTAGGAGCTATGCTGTTAGGGTTGGAGATTATCATACTCTGGTACCAGAGGAGTTTGAGGAAGAAATTGGAGTTCAACAGATTGTGATTCATCGGGAGTATCGACCCGACCGCAGTGATTATGACATAGCCCTGGTTAGATTACAAGGACCAGAAGAGCAATGTGCCAGATTCAGCAGCCATGTTTTGCCAGCCTGTTTACCACTCTGGAGAGAGAGGCCACAGAAAACAGCATCCAACTGTTACATAACAGGATGGGGTGACACAG
Seq A exon
GTAAGGCATAATCAAAAAAAGCAGGGCACCTTTTTGTGTCTGGTATTATCCATATATTTGGGTGTGCAATGGGCAATAAGATCTTAAATGGATTCAGACTTATTTGGAGAAATTTTGCTTAGTGTGAAATGCATGCATGTAATTGAGACTTATATTCTGGAGGTATTGTTGGTTCTAATGAGAACTTTAGCATAAACTGAGAACTCAGTTTAATTCAGTGAAGTAGATATGAATTGATGTGCTAATGCGAAACCAGCATTAATGCATTCTATGCTTTTTAATATACAGAATTCAAATACGAAAGCCTGCACAAATATGCTTTCTTAGGTCACCTTACTCTACAAATCCATAAATGTTATTCATTATTCCTCAGACAATTCAGTACTGAGAAATTTGTGAAGGTTAAGATTGTGTCAACATTAAAAAAGGCAGCTAACAATAGTACATACCAGTTAGTCATTGCTCATTTTAAACTACACTAATGCCACAACAGGGATTTTATTTTCATAACTATTACATGCTCAGTAACTGTTAAATGTTGCGATGGTTATCTGGAATGCCACTAATCAGATGTTTGGTCTGAGTAG
Seq C2 exon
GACGAGCCTATTCAAGAACACTACAACAAGCAGCCATTCCCTTACTTCCTAAAAGGTTTTGTGAAGAACGTTATAAGGGTCGGTTTACAGGGAGAATGCTTTGTGCTGGAAACCTCCATGAACACAAACGCGTGGACAGCTGCCAGGGAGACAGCGGAGGACCACTCATGTGTGAACGGCCCGGAGAGAGCTGGGTGGTGTATGGGGTGACCTCCTGGGGGTATGGCTGTGGAGTCAAGGATTCTCCTGGTGTTTATACCAAAGTCTCAGCCTTTGTACCTTGGATAAAAAGTGTCACCAAACTGTAATTCTTCATGGAAACTTCAAAGCAGCATTTAAACAAATGGAAAACTTTGAACCCCCACTATTAGCACTCAGCAGAGATGACAACAAATGGCAAGATCTGTTTTTGCTTTGTGTTGTGGTAAAAAATTGTGTACCCCCTGCTGCTTTTGAGAAATTTGTGAACATTTTCAGAGGCCTCAGTGTAGTGGAAGTGATAATCCTTAAATGAACATTTTCTACCCTAATTTCACTGGAGTGACTTATTCTAAGCCTCATCTATCCCCTACCTATTTCTCAAAATCATTCTATGCTGATTTTACAAAAGATCATTTTTACATTTGAACTGAGAACCCCTTTTAATTGAATCAGTGGTGTCTGAAATCATATTAAATACCCACATTTGACATAAATGCGGTACCCTTTACTACACTCATGAGTGGCATATTTATGCTTAGGTCTTTTCAAAAGACTTGACAAGAAATCTTCATATTCTCTGTAGCCTTTGTCAAGTGAGGAAATCAGTGGTTAAAGAATTCCACTATAAACTTTTAGGCCTGAATAGGAGTAGTAAAGCCTCAAGGACATCTGCCTGTCACAATATATTCTCAAAGTGATCTGATATTTGGAAACAAGTATCCTTGTTGAGTACCAAGTGCTACAGAAACCATAAGATAAAAATACTTTCTACCTACAGCGTATAAACTAGCAAAATTTGAAAGGATTTCTGGTAACTAAATGCCAGCTGGACATACAACCTATTTTATCCAACACATTAACATATCTACTATATTTGCTTTTAACAAGCACCTCATCATAGTCCACGTTCCCCGACCATGATGTAAGAGTGCCACCCACTGACACTTCCCTGTAACTGACTTATACCTGCAGGTTTTCCCAAGCCCAACCTGATACAATCCAATCTTAAAATATACTAGTCAAAATGCTTTCCTGGCCTACACATTGAAAAGTTCTAATACATACAGCAGTTATAACATATGCCAGGCACTGCATTAGGCAGCTTTGCACATCACTGACAATTTGCAAAAGGCCAGTAAATCTTATGGTAGTAGCCCTTGTTTTCAAATGGGGGAAAACAGGCTTGCCTCAAAGTGAGACCAGTTGGTGAAACTGATTCCAAACTCCAGAAAAAATGCTGATTTTTTTCCCCATGGTTCTCCTACCTAAATGATTGGTTTCCCTATGGCTATTTCTCCAAGAGTTAAGGGATAGCTGCTTAACTATGCACCTTTACAGAACATTCTTAGCAGTAATGCTCAAATTTAAAAGGCACACTCAAGATACTTCCATGTCATGGATCCTTCCCCAGGTCCCAGTAGTATAAATATAGGGAAGAGGTTAGCATGAACTTACAAATTGTTTTAAGTAATCCTCTTGAATGCCAGTCATTAAAGGACTTTGCCCTTCTACATCAAATTACATCCTTTTCACAAATCCCCATTTCTGTAATAACTGGTGCAAACCTAAAGGTGCTTTATAGTTTTACTACTTTGCAGATTTGCAATGCTGCATATAATGCAGAAGAGCATTAAAAACTTTTGTAAAAACTCATGATTTTGATAAACTTTTAAAGTAGCGTTTATATGTAAATAGAACTACACATGGCACACACACTTGCACAAGGGCTTCAGAAAAACGTGCAATATAGGTGAGAAAAATGTCTATTGAAACTTTCTCACAGGCTGCCCTTATAATTAAACTAGTGTTGGGGCAAGCAACATCTGTTTCAAGTAGATCAGGGACTAGCAAACCTAAAAGGCAGCAAGCAGCCTGCAGTTTGCTCAATCCTTAAGAATACATGGTTCATACAACATGCTTTTACTATGTCTTAAGTGTGACTTTTGAAAGATACAAGTGTTCTGTGCATATTTGTGTAAATAAATACATAATTTTCCACCTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099:ENST00000296498:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATGTGCCAGATTCAGCA
R:
CTTGACTCCACAGCCATACCC
Band lengths:
350-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development