BtaINT0118789 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27454094-27454383:-
Coord C1 exon
chr25:27454363-27454383
Coord A exon
chr25:27454257-27454362
Coord C2 exon
chr25:27454094-27454256
Length
106 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATTCCTGCCTCTCCACAGCAT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTCTTCAAGCAGCTCAGCGTG
Seq A exon
GTAAGTTCTGGGGCTGTGGGGCCTGGGCCTTACTTGGGTCTGGGTCGTGCTGAGGGTGAGGGCAGGCCAGGGCCCTGCTGTCAGCCTGATTCCTGCCTCTCCACAG
Seq C2 exon
CATGCGGGCAGCGAGGTCCTGGTCCCCCTGAGCCTCAGGAGGGCAACACAATGCCTGGCGAGTGGCCGTGGCAGGCCAGCGTGAGGAGGCAGGGCATCCACATCTGCAGTGGGTCCCTGGTGGCGGACATCTGGGTCCTCACTGCGGCCCACTGCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.3=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCAAGCAGCTCAGCGT
R:
TTTTCAAAGCAGTGGGCCGC
Band lengths:
184-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]