MmuINT0127546 @ mm9
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135032993-135033271:-
Coord C1 exon
chr7:135033251-135033271
Coord A exon
chr7:135033156-135033250
Coord C2 exon
chr7:135032993-135033155
Length
95 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATTCCCTCTTCTCTACAGCAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
GTCTTCAAGCAGCTCAGCGTG
Seq A exon
GTAAGTGATGAGGACCTGGGCCCCGGGCTGCACTCAAGTATGAGTGAGGGGAAATGGTATTGGCTGCAGTTAGCATGATTCCCTCTTCTCTACAG
Seq C2 exon
CATGCGGGCAGCGTGGCCCTGGCCCTCCAGAGCCCCAGGAAGGCAACACATTACCTGGTGAATGGCCCTGGCAGGCCAGTGTGAGGCGACAGGGTGTACACATCTGCAGTGGCTCCTTGGTGGCAGACACTTGGGTCCTCACAGCTGCTCACTGCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.418
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.3=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCAAGCAGCTCAGCGT
R:
CAAAGCAGTGAGCAGCTGTGA
Band lengths:
180-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: