RnoINT0118798 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199334860-199335139:-
Coord C1 exon
chr1:199335119-199335139
Coord A exon
chr1:199335023-199335118
Coord C2 exon
chr1:199334860-199335022
Length
96 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCAGTTGTGCTTCTCTACAGCAT
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTCTTCAAGCAGCTCAGCGTG
Seq A exon
GTAAGTGATGGGGACTTGGGACGGGTATGCGTGTGGGGAAAGGGTATTGTGTGGTCCTGAGGTCAGGACAGTGTCTGCAGTTGTGCTTCTCTACAG
Seq C2 exon
CATGTGGGCAGCGTGGCCCTGGCCCTCCAGAGCCTCAGGAAGGCAACACGTTACCTGGCGAATGGCCCTGGCAGGCCAGTGTGAGACGACAGGGTGTACACATCTGCAGTGGCTCCTTGGTGGCAGATACCTGGGTCCTTACAGCTGCTCACTGCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.3=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCAAGCAGCTCAGCGT
R:
GCAGTGAGCAGCTGTAAGGAC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]