BtaINT0118812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016973 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr25:27486655-27487321:-
Coord C1 exon
chr25:27487156-27487321
Coord A exon
chr25:27486927-27487155
Coord C2 exon
chr25:27486655-27486926
Length
229 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
CTTCACCCCTCTGCCTGCAGTGA
3' ss Score
8.58
Exon sequences
Seq C1 exon
CAGACTCTTGTGGTATGGTCCCTCAAGGACGCATCACAGGTGGTACCACTGCAGCTCTCGGCCAGTGGCCCTGGCAGGTCAGCATCAACCACCACGGCACCCACGTGTGTGGCGGCTCTCTCGTGTCCGATCAGTGGGTGCTATCGGCTGCTCACTGCTTCCCAAG
Seq A exon
GTACCCATGGGGTGGGGGGCAGGATGGGGAAGTGGGGCGGGGGTCAAGATTCAAGGATCAATGTAGGTCAGAGACTGGGGGTTCTTGGGTTGGATCTAGGGGGTATCAATAAAGCCTGTTAAGGATCTGTTAGGAGTGAAGGCCAGAGGTCACACGTCACAGGATAAAACTAGGATGCACAGTGGGACCCAAAAGGTCAGCTGCTCTGCCTTCACCCCTCTGCCTGCAG
Seq C2 exon
TGACAACAAGATAGAAGAATACGAGGTCAAGCTGGGCGCCCACCAGCTGGATTACTTCAGCACTGACACCCAGGTCCGCGGGGTGGCCCAGGTCATTTCCCACGAGAAATATTCCCACGAGGGCTCCATGGGGGACATTGCGCTCCTCCAGCTCAGCAGCTCCGTCACCTTCTCCCGCTACATCCGGCCCATCTGCCTCCCCGCAGCCAACGCCTCCTTCCCCAACGGCCTCCAGTGCGTTGTCACTGGCTGGGGCCACGTGGCCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016973:ENSBTAT00000037413:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCGTGTCCGATCAGTGG
R:
CAGTGACAACGCACTGGAGG
Band lengths:
298-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]