RnoINT0118837 @ rn6
Intron Retention
Gene
ENSRNOG00000019616 | Prss8
Description
serine protease 8 [Source:RGD Symbol;Acc:619973]
Coordinates
chr1:199374152-199375070:-
Coord C1 exon
chr1:199374908-199375070
Coord A exon
chr1:199374424-199374907
Coord C2 exon
chr1:199374152-199374423
Length
484 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CTTTGCCTCTCTCCCCGTAGAGA
3' ss Score
13.2
Exon sequences
Seq C1 exon
CTTCCTGTGGTGCAGTCATCCAGCCACGCATCACAGGTGGTGGCAGTGCGAAGCCTGGTCAATGGCCCTGGCAGGTCAGCATCACCTACAATGGCGTCCACGTTTGTGGTGGGTCTCTCGTGTCAAATCAATGGGTGGTGTCAGCTGCTCACTGCTTCCCCAG
Seq A exon
GTACCAAATCCTCCGTGGAGGGGCAGAGGGAGGGTCAAAAGTGGGTTGGAAACGGGGTTGGAAACGGGGTTTGGGTGACACAAGCCTGAAATCCCAGTACTTGGGGGGGGGGCAGGACCAGGAGTTCAAGGTCATCCATAGGCACTGCATAGTAAATTTAAGGCCAGCCTGGAATACATTACTCGGTCTCAACAGAAACAAGTATGTCATGGATCACTCCAGAGGTAGGCAGAGGCAGGTTGATCTCTGTGAGTTCAAGGCCAGCCTGGTTGGTGTAGAGAATTCTAGGCCAGCTCAAGATACATAGTGAGGGTCTGTTTCAAAAAGAAAGGAAGAAGCCAATCAGAGGTAAAGGTGACGAGGGAGGGCATGGGGTAAAAGCAGGCTGCTTGAGATCAGGATCTGAGTGAGGACAACATAAGGGTCAGGGGTCAGGGGACAGGAGAGGTCCCTCAGGTCCCACTCTTTGCCTCTCTCCCCGTAG
Seq C2 exon
AGAACACAGCAAGGAAGAGTATGAGGTAAAGCTGGGGGCCCACCAGCTGGACTCCTTCAGCAATGACATCGTGGTCCACACAGTAGCTCAGATCATCTCCCACTCGAGCTACCGTGAGGAGGGCTCCCAGGGTGACATCGCGCTCATCCGCCTCAGCAGCCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAATGGCCTCCACTGTACTGTCACAGGATGGGGTCATGTGGCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019616:ENSRNOT00000026572:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCACCTACAATGGCGT
R:
ACATGACCCCATCCTGTGACA
Band lengths:
348-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]