HsaINT0133044 @ hg19
Intron Retention
Gene
ENSG00000052344 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:9491]
Coordinates
chr16:31144003-31144709:-
Coord C1 exon
chr16:31144547-31144709
Coord A exon
chr16:31144275-31144546
Coord C2 exon
chr16:31144003-31144274
Length
272 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CCTTTGCCCCCTGCCTGCAGCGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
CTCCCTGCGGTGTGGCCCCCCAAGCACGCATCACAGGTGGCAGCAGTGCAGTCGCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTATGAAGGCGTCCATGTGTGTGGTGGCTCTCTCGTGTCTGAGCAGTGGGTGCTGTCAGCTGCTCACTGCTTCCCCAG
Seq A exon
GTACCAAATGGTGAAAGTCAAAAGTGGGCTGGAGGTCAAAGTTAATGGGTCAATCCAGGTCAGAGGTTGGGGTTCTTGGGTTGGGTCTGAGAGTGTCAGTTCTAAGTCTGGAAGGACCAGTTAGGAGTGAAGGTGAGGGGTCAGAGGTTACATGATAAAACTAAGGTGCAATTTGAGACCTAAAAGGGGCTGATCGGAATCAGGGGTTGGCAGTGGGGGTTGGGGAACAAGGAGAGGTCTCCTGGGTCTCAGCCTTTGCCCCCTGCCTGCAG
Seq C2 exon
CGAGCACCACAAGGAAGCCTATGAGGTCAAGCTGGGGGCCCACCAGCTAGACTCCTACTCCGAGGACGCCAAGGTCAGCACCCTGAAGGACATCATCCCCCACCCCAGCTACCTCCAGGAGGGCTCCCAGGGCGACATTGCACTCCTCCAACTCAGCAGACCCATCACCTTCTCCCGCTACATCCGGCCCATCTGCCTCCCTGCAGCCAACGCCTCCTTCCCCAACGGCCTCCACTGCACTGTCACTGGCTGGGGTCATGTGGCCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000052344-PRSS8:NM_002773:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(91.7=80.0),PF0008921=Trypsin=PU(0.9=1.8)
A:
NA
C2:
PF0008921=Trypsin=PD(6.2=5.4),PF0008921=Trypsin=FE(50.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACAGGTGGCAGCAGTG
R:
GTGATGGGTCTGCTGAGTTGG
Band lengths:
303-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)