DreINT0178807 @ danRer10
Intron Retention
Gene
ENSDARG00000059026 | zgc:123217
Description
zgc:123217 [Source:ZFIN;Acc:ZDB-GENE-051113-188]
Coordinates
chr12:4001512-4005249:+
Coord C1 exon
chr12:4001512-4001674
Coord A exon
chr12:4001675-4004974
Coord C2 exon
chr12:4004975-4005249
Length
3300 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
ACAATTCTCCATCACAACAGTAC
3' ss Score
4.24
Exon sequences
Seq C1 exon
AATGTGGGGTGGCTCCTCTAAATACACGTATTGTGGGTGGCACCGATGCCCCTGCAGGTAGCTGGCCCTGGCAGGTCAGCATACATTACAACAACAGGCACATCTGTGGAGGAACACTGATCCACAGCCAGTGGGTGATGACGGCCGCTCACTGCATCATCAA
Seq A exon
GTAAGATGGACTGATTTATGATTTTGCAATTTTAGTAACATAAATTCTAAAGTGCCCCATTGTGCTTTGTTGGATAGCTTTCATGTAGTTTGTAATAAGTTGTTGTAATAAGTTTATAAGTTGTTTGCAAATCCAAAATGTTTGCAAAGTTTCAAAGATTAAGTGCTGAAAACGTGCCCAGTGGAAACAAGTTTCACATAATTAAACCTACTTATATCTGTCGACATGATTCATAGAATGACTCATAGTAAGATGATTATTCAACTTATGCTCATTGGAGATATGTGCCTAGAGCTACATTTTTAGAACTGACAAATATGTACGCTGGACTACATCGTTTGGCAGATTTTATTTTAATGCTGCGTTCACACCAGACGCGGCACGCGCGTCAAACGCGAATGATTTACATGTTAAGTCAATGCAAAGCGCGAATAGACATCCTGCGGCGCGATACGCAAATTGCGCAAATGGCGCGGGGCAAATTGCGCGTTTGACATGCTTAACGAGCGTTTCGCGGGAATCTCTCGATTTCGAAAATCTGAACTTTAGCGTACATTCGCGCCGCGTTAACCAATCAGAAGCTTGCTCTTGTGGGGGTGTGATTGTGACGTAGAACCTGTTGTCGGTGTTCCGAGGGAAATCCTCCAGCCTTCACCGACAACAGTTCATCAAGCTCGGCTTGGCTCGGTCAGAAGCACCGCTGAAAACCTCCGTCATCCAGGTTCAGTTTCTGGAGGAGTTTATGTGCTCACAGACCTGGATGCACCTCTGAAAGGATGTAGTGGACTCAGACACGACCCTAAATGTTTCGTTGCTGTTTTTCAGTCTTCATAAAGCACATAAACACTGTTATTTTCTTCATAAAATTCATGTTAGCCTTTTAGCTATGAAGCTACAGTCTTCGGGCAGACAGAAGCCCTGCCCATCACGCGAATCCGCGTCTGTTCTGAAGTGAATTTGACACGCGAATGAAGCGAGGTTTGACGCACGAATGAAGCGAGTAAACTCAAATGTTCATGCGGCTATTTACGCGCGAATAGTGCGATTTACATCCATTTTATAGTATTTTTTTCCTTCGCTTTCATCAATTGGTGAAGTTTTGTTCCTCGCCACTGTTGCCACTGGCTTGCTTGGTTTGGGACTTGTAGAGCTGCGCATCGATGGATTTACTCTACAGTGTTTGGACTTTTCACTGATCTAAACTGAAATTCAACTCTGATAACTGAACAGACACCATTTCAGTTTACTAGAACTTCAGGAGTTCACACTTAGCTGATAATCAATATAGCGTAATTGGCATGCTGTCCCGGGAGAGACCCCTGAGCTCGTAATATCTTCGAGCCCGGGGTTCCCTCCCGTTAGAAGGGCGAGAGAGGAGTTCGAGCTCAGGTAGGTCTCGAGAACTCCCCTGCTTGTCGCCATGTGAGAATTATGAACCAAGGTTATCTTGGGTGATAATTTGGTTTAGTCTATTAGCTATGGTTTATGTTTTTGGACGGTGGGAGGAAACCCGGGGGAAACCCACGCGAACACGGGGAGTACATGGAAACTCCGTAGAAAAACGCCAACCGGCCCGATAGGAGGTTGGACCAGCAGTGATCTTTCAGTGTAGCAACAGTGCTAACCACTGGGTGACCGTGTTGCCCTATTGGAACAAAGGGGTGGAAGACGGGGTGGAAGACAGGGGGGTTGTAACTGGAGATAACTGGAGTTAAAAACTCTGGTTATTTATGTTGCTTCCGTAACCATCTAATAGGGCAGATTATGGAGCTAATGAGGTGCCAGCCGTGTTGATCATAAGCACGTGATCCTCTTGAAATTAGTTTAATATAAATAAATAAACTACACTTCTATGTTAAGCTGCTTTGACACAATCTACATTGTAAAAGCGCTATAGAAATAAAGATGAATTGAATTGCTGTTATAACCACAACATTAAAGCTGTAGTTTTTCTATAAAACAACTATAGAAAAAAAAACATGAAAAAAACAAACACATCTGTGAGAGACTCCGGTCGGCTTGTCATGTTTATATCAGCTTGATATTGACTGACCCATACACCCTCTTCCCTAAACCCAACCAATAGTGTTTTCAAAAACAAACTAAAAGAGAAAAGCCATTGCTGCTGTGTGCTTCTACCACAACCACACGCTGCTTTTTGGGTTTTGTTTTAACTGGTTTATGGACTCCTTCGCCAGACTTGAACTCATGTCCGCTCAGCACCATGTATGAAGTTTGGTGGTGTAAAGCCTGGTTTATACTTCTGCGTCGAGTGATCAGCAAAGCCGTGCATTTATACTTGTGCGCGCTGTTTGTATTTGCAGTGCAATAACACTTTCGAAACACTAGCTGGCAGTGGGTGTTTATGTTACTCTATGTCAAGTTTCTTCGCTGGTGTTTTATTTTTTCTGAACGTAACCTTAAATGTACAAGAGGCTTAAACTCACTCATTTTGAGGCAGGAATCGGCGGACGTGCAAAAACTTTAACCATAGGGTGAACACAAAACATCAGTTTCCATCTTGGTGCTCCTTTATGAGACTACACACTTGTAAACACTCGCTCCATCCGGGTTGCATGGCTCTCACCTCTGCCCACACTTGTCAGCGCTACCAACTGACCAATCACAGAGCTTGCGCTTATATTTTTTGAGACAGCCTTGGCGAGGGCTATGCGTCCACGTGTAGGCTGCGCCGGAGCATCCGCGTGCGCTTGATGCAGAAGTATAAATCAGCCTTTAATAGTGAACTACGAAGCAAATGAGTCATGCTGGAAAAGTCGTCCAAGCAATCAGCATTACCAGCCCTAACCGAAAGCCCCTAAGCAGAACCCAATAGCGTTCATTGCAGCCATATCTACCCACAAGCACATATTTCTCGGTTCTCAAAAATGTAGACCTGAGCACATTTTCCCAAATAGCCGTTTTATTATGTGTAATGGAGGCCAGCCAGTAGGTGCTGTGCAGGTAAAATCTCACTCCTCTGACCTCTGAAGGTGCTCTAGCGACAGATGCTAGAGGCCATGGTCTTTAGCCTCCTTGGTGGAACAACCGATTTCCATGCGAAAGGTTGCCAGTTCGATCTCAGCTCGGAGCGGGGTGGGTGGCGTAGGACCGGTGGGGTTACACACGACTATGCGCAAAACAGGCACACTGGGTCACGTAAATCACACAATGCAAAAGTATGAACTAATCATTGTAGGTGCGTAATTGCAAAATGGGGCACTTTAATTTATATTCAAATAGATCTGTGTTTTCTCTAGTCTAAACCAAACAATCTTTTACAATTCTCCATCACAACAG
Seq C2 exon
TACTAACATCAACGTCTGGACGCTGTACTTGGGGAGGCAAACCCAGAGCACGTCTGTGGCTAACCCAAATGAAGTCAAAGTTGGCCTTCAGTCCATCATCGTCCATCCAAGCTTCAACAACTCACTTCTCAACAATGACATCTCCTTGATGAAACTGAGTCAACCGGTGAACTTCAGTCAGTATATTCGTCCCATCTGCCTGGCAGCCAATAACAGCATCTTTTACAATGGCACATCCTGCTGGGCCACGGGTTGGGGAAACATCGGCAAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059026:ENSDART00000106650:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.8=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]