MmuINT0127564 @ mm10
Intron Retention
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:127926999-127927971:-
Coord C1 exon
chr7:127927809-127927971
Coord A exon
chr7:127927271-127927808
Coord C2 exon
chr7:127926999-127927270
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CTTTGCCTCTCTGCCTGCAGAGA
3' ss Score
11.7
Exon sequences
Seq C1 exon
CCTCCTGTGGTGCCGTCATCCAGCCACGCATCACCGGTGGTGGCAGTGCAAAGCCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTACGATGGCAACCATGTTTGTGGCGGGTCGCTCGTGTCAAATAAATGGGTGGTGTCTGCTGCTCACTGCTTCCCCAG
Seq A exon
GTACCAACTCAGTGGAGGGGCAGAGCGGGAGTCAAACGTGGGTTGGAAACAGGGTTTGGGTGACAAGGGCCTGAAATCTCAGTACTTGGGAGGTAGAGGCAGGACCAGGAGTTCAAAGTCATCCATAGCTACTACATCGTAAATTTAAGGCCAGCCTGGAATACATTAGACTCCGTCTCAAAAGAAACAAGTATGTCATGGGTCAGTCCAGATCATAGGCTGGACTAGTTCCTGGTGTGGGCTTGGGAGTATCAGTGTTCTTAGGCCACACAAAGAGGTCATGCTTTTGATCCTAGCACTTGGTAGGCAGAGGCAGGTTGAGCTCTGTGAGTTCAAGCCCAGCCTGATTGGTATAGAGAGTTCCAGGCCAAGATACATAGTGAGATCCTGTTTCAAAAAGAAGGAGAAAAGAAGCAGCCAATCTGAGGTAGAAGCGAAGGGTGAGGGGCCCTTGAGGTCTGAGGGAGGACAACATAAAGAACCGGGTCAGGGACAGAAGAGGTCCCTCAGCTCCTACTCTTTGCCTCTCTGCCTGCAG
Seq C2 exon
AGAACACAGCAGGGAAGCGTATGAGGTGAAGCTGGGGGCCCACCAGCTAGACTCCTACAGCAATGACACTGTGGTCCACACAGTGGCTCAGATCATCACCCACTCAAGCTACCGAGAAGAGGGCTCCCAGGGGGACATCGCGCTCATCCGCCTCAGCAGTCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAACGGCCTTCACTGTACTGTCACGGGATGGGGTCATGTGGCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800:ENSMUST00000032988:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCATCACCTACGATGGC
R:
CCCATCCCGTGACAGTACAGT
Band lengths:
343-881
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types