BtaINT0120926 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19354948-19359393:-
Coord C1 exon
chr26:19359202-19359393
Coord A exon
chr26:19354968-19359201
Coord C2 exon
chr26:19354948-19354967
Length
4234 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCTCCTCTGTCTCGTTGCAGGAC
3' ss Score
13.11
Exon sequences
Seq C1 exon
CCCCCTGCCTGGAGAGGCACAAAAGGCTGCTTGCAAGCAAGTTCCCAGCCTGGTCCTGGGCAGAAATGACCACATGTGGCCGGGGGCTCAGGAGGGCCGTAGGCGCCTCTCCCCGCCCCACATGGAGACGAGCTCTCTTGGACACCAGGGGACGCCTGAAGCCTGAGTACGATGCAGTGGTGGTAGGCGCAG
Seq A exon
GTAAAGTGGGCTGGGCTGGAGTTGAGGGGCCAGAGGGCAGCCTGCCCAGAATCCTGGGGTGGTGGGGGGGGGCGTGCCCATCCACGCCCCTGCCCTCTCACTGCTTTGGCACAGGCTGGCCGGGATTTGGGGTGAGAGCAAGTTGCTAGGGTGAAAACTCCACCCGTCTGCGAGCAGATGCCAGGATTCTGGAGCTGGCTCTGCCGTCGACTTGCTGTGTGGCCTGGAGCAGATTTTTGCCCTCTCTGGGCTTGAGTCTACCCATCTAAAATGACCAGGGAGGATTAAGTGAGTTCAGGAGTTTCCATGAATCTCCTGTGAAATTAGCTAGTTGCTGCCACATCCTTGGAAAGCATATGGTAGGTAAGGGTTGCGAGGAAGGAGCCCTGGTACAACAGACCTTTGAAATCCTGCCGCCCCAAGTGTTCTAGGGCTTCCCTGGTGGCTCAAATGGTAAAGAATCTGCCTGCAGTGCAGACCTGGATTTAATCCCTGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCAGTCCAGTGTTCTTGCCTAGAGAATCCCATGGATAGAGGAACCTGGCAGGCTACAGTCCACGGGGTCACAAAGAGTCAGACACGACTGACTAGTGTGAGCAATTAACACAAGTGACTTGAGTTCTGGTCACCAGTACCTGACCACTGAGACCATCCTGAGGACACTACAGTCATTCCGTCAAGGGGAGTTAGGGGAAAATAGACACGAGTCCCAGAGGTCCTCTCGCCTGTCTGCAGAAGTGACAGCCCTCACTGCCTTGCCCACCTGGGCTGTACAGGACCTGCTGCGGTGACCCCGCTGCGCTTTGCTGAGCCCCAGGGTGCAGGGCACTGGTTCCACCTTGAGCCTGTGAGGCACCAGGCCAGGACCAGGCTCCTTTTCTCGGGGCCTTCCACTCACAGCCTCAAATTCTACTTCTGACATTATTTCCAGCTGGGTTTATACAGAAAGAGGATGACAGGCCTGGAAAGACCTGCTCATCACATGGCTTTAAAGCTGCATCCCTATTTGGGCCTTTCTTCATTTTCATCCCTACGGAGAGCTGTCCTGTGCTGGTAAGTGCTTACCAGTAACCTCTCCAGGGGAGAATGTGTGCATATATATCCATACATGTTTATTGTAAATACTGAAGTCAAAGAAGTGTAGCACAGTTTTGCAGGTGAGATATACAATACTCTAAATTCCAGGTGGCCAGTCCACTCAGCAAGTGCTCGTGACTTTTGCTGAACTCAGTGACCAACCTACGGCTGCAATTTGACAAATGAAAATAGTTTTGAAGGAAACATTGTATGATATTTTTATTTTCTTTAAAGAGCAGAAAGATAGTGAAACAAAGATTTATGTCAGAACTTCTCTCCTCCTTCAACAATTGGAATGATCTTACTCAGTCAAATAATATTTTGCGAACAGGAGAACAGTTCCTCAATTGTTTGTTTTCACAAGGTAACTGCTGTGGGCACAACTGCCAGTTAAGTTTAATTTGCATTATTAGCATTTTCTCCATCACTTTCTTAAGTCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTTCAGTACATGAAAGTGAAAAGTGAAAATGAAGTTGCTCAGTTGTGTTCGACTCTTCGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGGATTTCCCAGGCAAGAGTACTAACAACCAACAAAATAACAACCCAGGCCCTGGTGTGTAGTGTTCGTGGATTTCCATGGTGTGACTACTCCCACTGCAGCCTTTTTCTAAGTTACCAACGTGATGTCTCTGTGAATTTGGGAGAGAGATGCAGCCAGGCATCATCAGGCAGCATGGCCCCTGTATGTGTCCATGGATGTAAGTAACCGTGAAGACATAGACAACAGGAAAATATAGTAAAACAGTTAGGAAATGACAAGCTTTGAGTATTTATTACCTTTGTCTTTAATATCATTATTTCATTGTAAGTTTATATAATTTTTATCAGGGGCTGTTTGACAACTGTCTCACCAACTTCCAGGGCTGGGGGACTCCAGCTCCAGTGCCCACTGACTGGGCTCAGTAAACGGAAGTTCCTCCCACCTTTTCTGCCCTTGGAGACAACCCACCCCTGCTGTCTCTTGGCAGAGAGGGTTGATCCTAGGTCCCCAGGTACCTGGGTGAATGGCTCACAAGTGTGTTTCTCAGGTGTGAATTTTTCTTCAACGTTGCTTCTCTGATTGCCAAGCAAGGCAGGAAACCTGGTTTGAAGACTTATCCAACCTGAGTGAGGAGCACAGCGGTATCTTCTGAGATACAGATCATCTCTGCTCCCTGAAGTCACACCAGTAACCTGGCCATCATCCTGATTCAGTTATTTGACCAAATTTGCCTAAAGGATGACCCAAGGAGCTTGTTAAAATGCAGTTTAAGGGCTCCCTACCTGGTGATTAGAGTTCTGAGGGGATCATCACACCTAACCAGCTCTTGGAGTGGATCTGATGTGGCACCTGCAGCCCACACATTCGGGAACCCACGTTCAGCACACCCCTCCCCCCACATCCCTCTGTGCCTGCTGCCTAAGGAACTCTGCAGTCAGGCCTGGAGATTAGCTGAGCCTGCAGCTTAAGACTCCTTGCAGGGGAAGGGAGAGGTCACCAGAAGCCGCAGGACAAAGTTTCAGCCACAGCTAGAGTGGGGGAGTGGTGGAGGGAGGAGGAACTTGGGCTCTTGGATCCCTGCCCTTTGCCATTTGAGGTCTGTTTGTGCATTTGTGGGCTTACACGTGATGACTGAACTGGACCCTGTTGCCTGGAAGCCTTTATTAGTTTTCCAGGATTTATGATCAGCACTAATTATGGGTCTGCTAAGGCACAAGTGCTTTAGGTATATTACTGGTCATCCTCCCTGCGACACTGCAAGCCCAGCAGGCCCTCTGTTTACACGTGAAAAAGACGCCAGACAGCAGGGCGAGCCCAGGACAGTCTGCCTTTAATCTGTTGTATGTGTTTGAGAGCACGGCTTTTCAGACTTCAGGTTGCAATTCATTCATAATTCCCATCCATCACACTTTTTTAACTTTCTTAAGAAAATTATCAAAAGCAGGTTAAAAACAGTAGTCTATCAACTAGCATTTTTAAATGAAATATACAAATAGATCATGACGTGCTTATCACATGATGATTCGATGTTAGTTCATGAAACACGTGCTAGGCCTGTGGTCTGAGACCACCTGCATCTGAATGACCAGGGAGCTTCTATGAAGTCCGTCCTAGTCCCTGCCCCCAGCCTGCCCAGTAGATTCTGGGGAGGGCTCCGGGAATCGGTGATGACGCTCGTTCTTAAGTGACCCTGAAGCTTCTCAGAGCTGGAGAAGCACTTGCTAGCCGTGGACTTGGTGTGGGATGTGGGACCCCAAACCAAGTTCAGGGCTTGCACCCCAGGGGCTGCCTGCCTAAAATTTTTGGAAAGAAACTTTATACCAGACAAAGCTGCCCAATCGTCTAGCACCCTGAAGCACACTCAGCAATTCTAGCGAACGTTGACGCTGTATGTGTTGAGTTCATTTTGAGCTGTTCCATCTCAGGAACACTGGAAACTGACAAAGATTCCCCTTCTGGAGCCCTGTTGTGCGGCATGCTTGGGCAAAGCAAGCCCTGCTTGGCGGCAACTGTCCACATGACCAGCACTTACCTGGATGACCAGGGACACCAGCATCAGAGCACGATCAGGCCTCCCTCTCTTCCTCTAAGTCAACTCTGACGCTTCCTCCGACAGTCATCTGCTCAACCTCCCTTGCTGGAAGCCCAGCAAGGCTTTGTGGGGTCACTTTCATCTGATGCCTGCGGGTTCCCCTTGTCCCCACTCCAGCATGAGCCATTGGCCAAGCCAAGGTGACAGGACTTTTTTCAATTTGGGGCAAGAACCAGGGTTTTGTGATTCCCCAAAGACCAGGTGTCTTACAGTGTCAAGCTAGATGCTGTTCCAACACCCAGGTTCAGGTGAGGGGGTCCCGCAAGTTCTGCTACCTCGCCAGGATCCTCATGGGTATGGGGACAGGGGTGGCGGGCCACACTCCTCAAGGAATGTATCTGCCCGCTGACCACGGTCACTTTCCTCCCCTCTCCTCTGTCTCGTTGCAG
Seq C2 exon
GACACAACGGGCTGGTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313:ENSBTAT00000032952:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
NA
C2:
PF134501=NAD_binding_8=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]