MmuINT0130056 @ mm10
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42749384-42752775:-
Coord C1 exon
chr19:42752337-42752775
Coord A exon
chr19:42749404-42752336
Coord C2 exon
chr19:42749384-42749403
Length
2933 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTTTCTTGTCTCGTTGCAGGAC
3' ss Score
12.05
Exon sequences
Seq C1 exon
TAGCCCACTACCGGGCCTGGGAGAACCTAGTTAAATTGTTCTCTCTTTGGTCCCTACTCGCTTGACTCCTGGAGGCTACTCAGACTCTGCCACCTACTCGCTTGACTCCTCGAAGCTACTCAGACTCTGCCAGTTCTTAGCCTACATGCCCCCTCCTCTAGGCTGGCTTGCGCAAACTCAGAGCCGCAGAAGCTCGGACCCTGGGAAACGGTGGCCCAAGGCCAAGGCTGACACTGAACTGTAACTCCCAGCCCCTCCCCTTGCCTGGGCCTCTGGAAAGCTGACTGTGCAAGCAAATTGCTGGGGGCAGAAATGGCTGCCGGCGGCCGAGGTCTCATCAGGGCCTTGCACTCCTCTCCCTGCCCTACTTGGAAACGAGCTCAGTCGGGAGCCAACGGGCGCCTGAAGCCCGAGTACGATGCCGTGGTGATAGGAGCAG
Seq A exon
GTAAAACCAAAGAGGGCAGAGCCAGAGCTCAGGGAAGGAAGGCAGCGTTCTGCCCACCGGCCTTGGAGGGGCCTCCAAGGAGCCTTGCTGCTGCCTCTCCTATGGGCACGACCTGGCCGGGAGTTCCAGTGAGCAGGACCTGGGATGGAAGTCCTCCCTGGCCTGGGAATCAGGATCCCTGGGTTCTAATTCCACCCTGGTGTGCTGTGTGGACTAGAACGGCTCTTGCCTTCTGGGTTTAAACCTTTCTCTCTAGAATGATAATGAGTGACTAAATAAACGCAGGAGTTTCCCTGTATCTCCCGCAAAATGAGTGAGTTCCTCCCGGGACCTTATGCAGGAAGCAAAGACCTCCGGACTGTAGACAAATGAGAGCCAATCTCACTTCTGCGATCATCCATTGGAAAAGGAAGCCAGAGTTGTTTCATAAAGAGAAAAGGTGGTTGAGGGGTTCCCAGACACCCTAATGCATCCACAAAGGGTGTCATCTCCCATGGCTTCCCTCAGACATAGATACCTGCTACAGTGGTGGTCCTGCAACATCTTGCTGACTCTCAGCCTCAAGTACTAGGTTAAGGCATAGCCTAGGGCCAGGCTGCACTCCACACCAGGGCCTTCCGGGTCACACTTTTGGGACCTGAAGGCTTTTATTCCCAGCTGGGCTTTTACATAGATGATAGCAGGTTCACATTTTTTTGTGAGACGCATCACACAGCTTTAAATAAATGCTGGCCTGGTTTGGCTTCTTCTTGTGTCTACTGAGAACCACCCTCTCCAATTTGTGCACGCATGAGTGAGTGTTTATTATACACAGACTTGGTTTTTTTTATTATCGATACTAAAATAAAGATATGTCTCACACAGTTTTTACAAATCAAATATATGCAACTCTTGATTTAAATACCAAGTTGGTTTTTTTTTTCTTTTCCCATTGAAAACATCCACTCAACACTCCACTGTGTGAAGACGATGGCAGAAGGGCCCAGGCTCAGTGGGCTCCTGCTGGGTGGGCATCCCCCTGAGGGCTGGGGATTAGCAGATCCTGCAGCAGAAAGGGACAGGTCACCTGAAGCCACAGGAGAGTCAGTCAGGACTTGGGGACTGGACTTTGGGGGTTTTGTTCTTTGTCACTTAAAATCTCCTTGTCATTCATTCATGGCTGAACTGAGACCAGTTGCCAAGGAAACTTGACAAGTTTTCCAAGACTGATGAGCCACCAATGAAAAGCCGATAGCCACCACGTTTGATGCAGCCTTGCAGCGGGCTGAGTGTTTCTTAGACACTGCTAAGTCTCCTCCCTCAGTACCACAAGGTTCCACATTATATATGAATATGTATGTATATTATATATATATTACATGCATATTACTCTCTGCCTTACAAATGGAGAACTTCAAAGCAGCCACTGGTTGTTAGATGCCTCTCTGGGGGTCAAGCCAGGTGAAGCCTGGGCTGCCTGCCTTGAGTTTATGTCTATATTCAGAGAATGGTTCCTCCAACTGCGGGTTCACACCAAGGACAGGCCCAACGGCATTTTTTTTAACTCTCATGAAATTTTTCTAACATTTTAAAAATAAAACCACATCGAGTCTCCCAACCTGTGGGTTGTGACTCCTTTGAGGGTCGAATGACCCTTTCACAGGGGTCAGATATCAGCTATCCTGCATATCAGATATTTACATTATGATTCATAACAGCAAAATTACAGTTATAAAGTAGCAACAAAAATAATTTTACGGTTGTTCACCACAACACGAGGAGCTGCATTAGAGCCACGGCATTAGAAAGCCTGAGAGGCACTGCATGGCATAGGTCATCGCATAAACTTACCACAGGATGGGTTACTGTGAGAGCATGGAGCTTTGGTCCTGTGAAACATTTATTAGTCAGGTGAGTGCTAGGTCACGGTGTAAAGTACATTTATTCTTGTGAATAGTGAGCAAAGGGCTTGAAAACTCCAGTTTCGGAGACTCCGTTAATGGCTGAGAAGTTGGCTCAATGACCTCTAAAACTCGGGACGTCTCCATGTGGGAAATTTAAAACGAAAGCAACTCAGCCATGGAGAAATTCATCACAGGGGGGGTCACGGCTGCTCCCCTGCGTGTGGACATTTGTCAGATAAGAGTCAAGCATTTAGATCTGAGCCCACAGTGGGTTCGTCCAGGCGGGTGCTGCAAGATCACAGGCATCTATTGACATCTGAAAGATAAGAATGGCATCTGTCACCAACGTGAAAAATAACCAGGGGCCCCAACGCTGGCCAACACCCTCATGGCCTATTCTCTGCCTGTGAATGATTCTCCATCAACAGCTGACCTGTCTCCGTGGGCAGGGCACAGCCTGAGGCCTGTGCGCTCGGGGTAATTCTGATGCTGTTTGCACAGAAATCACTGGGAAATTGTAAGAGATCAGGTTCCAACACAACACCCGCAGCCTGCAGGAGGGAGCCTGTGTTGTTACTGGTGCACACCTTGAGGCTCTATGAGTTACTCGCTCCATTTTCTAAAATTCTGAACTATTCGTATGTCCTTGTTGGAGCACTGTGGACTGACAGAGACACTATTGTGCCTAGTTCGAGCCACCTTGGGTCAAACAAGCTATATGTGACAGCAGCTGTCCCCATGAGTGGCACTCAGCCCCTGCCCATACTTACCTTCGAAGCCTTCCCAGTCACGTAGACCCAGACCATGCCACTTGCACACTGGCTCTCTAAGATCAGAAGTCCAGGGACATCCCCCTGACCTGAAAGCAAGGAAGAGAGCTTCTTCCAAGCCGAGTCCAACAGACCCAGAGTGGCTTCCTGGTGCCCCGTGAGATGCTGAATCCAATGGAGGACAGAGGAGAAGATACCCGGGGCCTGGGGAAGAAATAAGGGGACTCAGCGCTTAAAGAGCATGTGTTTAGTAATACTTTTCTTTCTTGTCTCGTTGCAG
Seq C2 exon
GACACAATGGGCTGGTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224:ENSMUST00000076505:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.9=9.3)
A:
NA
C2:
PF134501=NAD_binding_8=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types