RnoINT0121125 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261983651-261986759:-
Coord C1 exon
chr1:261986630-261986759
Coord A exon
chr1:261983671-261986629
Coord C2 exon
chr1:261983651-261983670
Length
2959 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGTCTCTTGTCTCCTTGCAGGAC
3' ss Score
13.62
Exon sequences
Seq C1 exon
GAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCCCTGTCCTGCTTGGAAACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCGGTGGTGATAGGAGCAG
Seq A exon
GTAAAGCTAAGGAAGCCAGAGCTCAGGGAGGGAAGGCAGCGTCCTGCCCACTGGGCCTTTGAGGGACCCCCAGGGAGCCTCCCTGCTGCCTCTGCTGTGGGGCACAACCTGGCCGGGAGTCCCAGTGAGCGGGGTCTGTGATGGGAGTCCTCCCTGGTCTGGGAGTCAGGATCCCTTGGTTCTGATTCCGCCCTGGGGTTCTGTGTGGTCTAGAACGGGCTCTTGTCTTCTGAGTTTAAACCTTTCTGTCTAGAATGACAAGGAGTGACTAAGTAAACGTAGGAATTTCTCTGTATCTCCTGCAAAATGAGCGACTCCTTCCGGGACCATATGCAGGTAGCATTATGGTACTTAAGGGTGAGGAAGAAAGACCTCGGGACTGTAGACAAATGAGATCCCACTGTGAGTTCTGGTACCCATCTCACTTCTGAGATCATCCATTAGAAGAGGAAGCCAGAGTTGTTTCATAAAGGGAAAAGGTGGTTGGGGGTTCCCAGACACCCTAATGCGCACCCACAAAGGGTGCCATCTCCCATGGCTTCCCTCAGACATAGATACCTGCTATAGCGGTCGTCCTGCAACCTCTTGCTGACTCTCAGGCTCACAGCACTGATGTGTGCTGGGTAATAGACTGAGGCATAGCCTAGGGCCGGACTGCACTCCACACCAGGGCCTTCCGGTTCACACTTTTGGGGCCTGGAGGCATTTATTTCCAGCTGTGCCCTTACGTAGACGATAGCAGGTTCACATTTCTGTGAGACACCTCACACAGCTTTAAGTAAATACCAGCCTGGTTTGGCCTCTTCTTGTGTCTACTGAGAGCCACCCTCTCTGATTTGTGCACACACGAATGTTTATTACACACAGACTTGCTTTTATTATCGATCCTAAAATAAAGATATGTCTCACGCAGTTTTTACAAATCAAATATACAGAGCTCTCGATTTAAATGCCAAGTTTCATTCCATTGAAAACACATCTACCCAACACTCCACACAGGGAGTGAAAGGACAGCAGCAGGGCCCAAGGTCAGCAAGCTCCATTCAAGGGCTGTGCCTTTCTGAGTGGACATCCCCTCAGGCCTGGGGGTTAGCAGGTCCTGAAGCAAAAGGGGACACAGGAAAGTCAGTGAGGACTTGGGGACTGGACTTTGGGGTTTTGTTCTTTGTCACTTGAAGTCTCTATCATTCATGGCTGAACTGAGACCATTTGCCAAGGAACCTTTGCTAGTTTTCCAAGATTGGTGAGCCACCAATGAAAAGCCATGTTTGTTACAGCCTTGCAGCCAGCTGAGTGCTTCTCTGGACACTGCTAAGTCTCCTCCCTCAACACCCCAAGGTTCCACATTGTATATGAAGGATATATATTACATGCATATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTGCCCTACATGTTAAGAACTTCAAGGTAGCCACTGGCTGTCAGATGCCTCTCTGTGGGTCAGGCCAGGTAAAACCCAGGCTGCCTGCCTTGAATTTATGTATATACTCAGAGAATGGTTTCTCCAATTGCTGGTTCACACCAATGGCAGGCCTAACAAGCATTTTTCTCTTTTAACTTTCTTATGAAAAAATTATAACATTTTAAAAATAAAACCACAGCGTTCCCCAAACCTGTGGGTCTTGACTCCTTTAAGGGTCAAATGATCCCTTTCACAGGGGTCACATATCAGCTATCCTGCATATCAGACATTTATATTATGATTCGTAGCAGCAAAAAATAATTTTATGGCTGTTCCCCACAACGTGAGGAGGTGTACGGTCGCAGCACTAGGAAGGGTGAGAACCACTGTATGACATAGGTCATCACAGAAACTTACCACAGCATGGGTTACTGCTAGGGCATGGAGCCTTGGTCCCGTGAAAATGTTAGTCAGGCGTATGCTAGGTCATGGTGTAAAGTACATTTATTTTGTGAATAGTGAGCAAAGGGCTTGAAAAATCCAGTTTCCGAGACTCCACTAATGGCCGAGAAGTTGGCTCAGTGACCTCTAAAACTCTGGGTGCCTCCGTGTGGGAAATTTAAAACAAAAGCAACTCAGCCATGGAGAAATTCATCACAGGGGTCATGGCTGCTCCCCTGCTGGTGGACATTTGTCAGATAAGAGTTGGGCATTTGATTTGAGCCCAGGCTGGGTCCAGGTGGGTGCTGAGGGATCACACACATCTACTGACATCTGAAAGGTAAGAGTGGTACCTGTCACCATCGAGAAAAATGACCGGGGGCCCCAAAGCTGGCTGACACCCGCATGGCCTATTCTCTGCCTGTGAATGATTCTCCAACTGCTGGCCTGTCTCCATGAGCAGGGCACAGCCTGAGGCCTGCGTGCTTGCTATAGCCCTGGTGCTGCTTGCACAAAAAGAACACTGGGAAATTGTAAGAGATCGGGTTCCAGCACAACACCCGAGACCTGCAGGGTGTAGCCTACTTTGTTACTGATGCACACCTTGATGCCCTATGAGTTACTCGCTTCATTTTTAAAAATTCTGAATTATTCGTATCTCCTTGTTGGAGCCCTGGGGACCGACAGAGACACTACTGTGCCTGGTTCCATGCACCTTGGGTCAAACAAGCTATGTGTGGCAGCAGCTGTCCCCATGAATGGCACTCAGCCCCTGCCCACACATACCTTTGAAGCCTTCCCAGTCATGCAAATCCAGACCATGACACTTCCATACTAGAAGTCCAGGAACTTTTCTCTGACCTTGAAGCAAGGAGCAGAGCTTCTTCGAAGCCAAGGCCAACAGAACCGGAGTGGGCTTCCTGATGCCCCCTGAGATGCTGAATCTAAATGTGGGACCGAGGAGAAGATATCTGGGGCCTGGGGAGAGACAGCGGGACTGCACGCTTAAAGAACATGTATTTGGTAACACTTGTGTCTCTTGTCTCCTTGCAG
Seq C2 exon
GACACAATGGGCTGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
NA
C2:
PF134501=NAD_binding_8=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]