GgaINT0044273 @ galGal4
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21794644-21795102:+
Coord C1 exon
chr6:21794644-21794812
Coord A exon
chr6:21794813-21795082
Coord C2 exon
chr6:21795083-21795102
Length
270 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ACCCCCTTCTCTCCTTGCAGGGC
3' ss Score
13.69
Exon sequences
Seq C1 exon
ATGAAAGCAAAGTCCAGGAGCTACCAGCACAGCACAGAGATGTTGGCTGGGCTCCGTGCATGCCTGGGTGCAGGCTGTGCTGCCCACGGGCTGCGGGGGCATCGCCTGGCTCATAGTAGGACCACAGAAAAGCTGCAGCGAGAGTATGATGCCGTGGTGATCGGGGCAG
Seq A exon
GTAACACGGGGCCAGGAACTGGTGTGGGTGGAGCAGCTCCCAGCTGTGAATGAGTCTGGCATGGATGGGCATGCGTTGCAGCTCCACGGTGTGCTGCTGGCACAGGGGTCAGAGCTGGGGATGAGTTGGGGCCCAGGAATGTAGGGATGGAGAGGATGCTTGCTGATGCCTGCCTCTTCATGTCCAGAGTCTCGCTATTTGGGTGTCCTGCATCTGTGCGTGGCAGGGTGCCATGGGGCTGCCCTGGCTCACCCCCTTCTCTCCTTGCAG
Seq C2 exon
GGCACAACGGGCTGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=7.0)
A:
NA
C2:
PF134501=NAD_binding_8=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]