BtaINT0120959 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51490982-51491566:+
Coord C1 exon
chr22:51490982-51491107
Coord A exon
chr22:51491108-51491515
Coord C2 exon
chr22:51491516-51491566
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
CTTGCCCATCTGTCCTCCAGCTT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCCTCGCTACAAGTGGTGGAGGCTGCATTAGTGGACTGTTCTGTGGCCCTGGCAAAGCCCTTCGACAAGTTCCAATTTGAGCGCCTTGGTTACTTTTCCGTGGATCCAGACAGCAACCAGGGACAG
Seq A exon
GTGCTTGAATCTACCTTTCCACCACAATGCCGATGGTAGCCGCCATTCTCTACCCCAAGCACTATGCTGACATTTTCTTACTTAATCCTCCCCACCTGCAGTGGGATCCACGTTCCACTGAGGAGAAAATAGGCTCAGAGGTTAAGGCTATGCACATTTTCTATGAACCCTTCCTTACTTATTCCTCAAGATAGGCTGGCATAGGGATTGTTATAATTCTTACAAAATGGAGACCCAGAGCCAGCCAGTCCTTTAACCAAAGTCAAAAAGTTACTGAGAACTAGAGTTCTTCGGCGCTCAGCTCCTCTGGGATGAAGTGAGGGTTGGAGTGGGGTGTCTGGTGAGACTCACCCGGGCCTCCTGGCCTGGTTCGGGCTTGGTGGTCATTCTTGCCCATCTGTCCTCCAG
Seq C2 exon
CTTGTCTTCAACCGAACCGTCACACTGAAGGAGGACCCAGGAAAAGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PD(18.2=81.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]