RnoINT0121194 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117304893-117305702:+
Coord C1 exon
chr8:117304893-117305018
Coord A exon
chr8:117305019-117305562
Coord C2 exon
chr8:117305563-117305702
Length
544 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TCTCTTCCGCTGCCTTTCAGGTT
3' ss Score
11.35
Exon sequences
Seq C1 exon
GCATCACTACAAGTGATTAAAGGAGCGTTGGTGGACTGCTCTGTGGCTTTGGCAAAGCCCTTTGACAAGTTCCAGTTTGAGCGCCTTGGGTACTTCTCTGTGGATCCGGATAGCCATCAAGGACAG
Seq A exon
GTGCTTAATTCACCTCCCTCCACCTTGGCAGTACTGTAGGTGGCAGCTGATAAACACTCTCCCTACCTCCCCTTAGCCTTCTCCAAATAAGGAGGGAGGGATAGTCATGCATTACTTTTCAGTTAAGTCCATGCACAAAATGTTACAGGGCTCTAGGGCTCTAACTTTTTTTTTTTAAGATTTACTTTGAGTACACTGTTGCTGTCTTCAGACACACCACAAGAGGGCATCAAATCCCATTAGAGATGGTTGTGAGCCAACTGTAATGAGATTAAACTCAGGACCTCTTCTGGAAGAGCAATCAGTGCTCTCAATCACTGAGCCATCTCCAGCCCTGGCCCTAACGTTTTTACTCTTCAAAGCAGCAGGCATGCTTAGAGTTTGTCATAATTCTCATGAAACTAAGGCACAGCACAGTTATCTAGTCCTTTATCTGATATTACAGAGATACTGAGAACCATGCATGATACCTCACCTCCTTGGTGACGAAGGGCAAGAGGGCTGGTTCTGGGCCGTTGGTCATTTCTCTTCCGCTGCCTTTCAG
Seq C2 exon
GTTGTCTTCAACCGAACAGTCACACTCAAAGAAGACCCAGGCAAAGTATGAACTGAATACATGTGGCCCTACCTCATTCTGGAGGCTGGGGGTGCCCTCACCACCCCACACTCCATTTCAATAAAGAGTAATTAAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGATTAAAGGAGCGTTGGT
R:
CTCTTTATTGAAATGGAGTGTGGGG
Band lengths:
246-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]