GgaINT1023087 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11586018-11586359:+
Coord C1 exon
chr12:11586018-11586143
Coord A exon
chr12:11586144-11586227
Coord C2 exon
chr12:11586228-11586359
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGCCTCTGCCTGTCCTCAGCTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GACTCCCTACGTGTGGTGGACGATGCCCTGGTTGACAGCTCTGTCCTCGGGGCACGGCCCTTTGATAAGTTCCAGTTTGAGCGCTTGGGCTACTTCTCAGTGGATCCTGACAGCACTGACAGCAAG
Seq A exon
GTGAGCCCTGGGCCGGGGGGGGCAGCACACCGGGCCCCCCTGAGAGGCTGCAGTGCTCTGAGCCCCGCCTCTGCCTGTCCTCAG
Seq C2 exon
CTGGTGTTCAACCGGACTGTGACGCTGAAGGAGGACCCCGGCAAAGCCTGAGCCCTGCTGGAGACCCCACTGCCTGTGTGCCCCCCACCCAGGGGGAAGGCTCCTGGGGGAGGGGGGGCAGGATGGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTGTGGTGGACGATGC
R:
CAGCAGGGCTCAGGCTTTG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]