Special

HsaINT0135712 @ hg19

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49133365-49135550:-
Coord C1 exon
chr3:49135425-49135550
Coord A exon
chr3:49133513-49135424
Coord C2 exon
chr3:49133365-49133512
Length
1912 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
3' ss Seq
CTTTTCCCTCTGCCCTCCAGCTT
3' ss Score
8.77
Exon sequences
Seq C1 exon
GCATCACTACACGTGGTGGATGCAGCATTAGTGGACTGCTCTGTGGCCCTGGCAAAACCCTTCGACAAGTTCCAGTTTGAGCGTCTTGGATATTTCTCCGTGGATCCAGACAGCCATCAGGGAAAG
Seq A exon
GTGCTTGACTTTACTCACCTGCCCTCATCTGCAGCAGTGACAGTGGCTGCCGTTCATTGTGCCAAGTGCTCTGCATACATTCCCTTAGTTAATCCTCACCACCTGAGGGAGTTGGTATTCATATTCTACTAGTGAGGAAACTGGCACTGAGGATAACTCCAGGCACAAAATTTTGTATGAAGGCTGCCTTTTTTTTTGAGACAGTCTTGCACTGTCGCCCGGGGCTGGAGTGCAATGGCACCATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGAATTCCTGACTTCATGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATCACAGTCATGAGCCACTGCACCCGACCTCTTTTTTTTTTTTAATTATTATTTTTTGAGGCAGGGCATGGTGGCTCACACTTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCTGATCACCAGAGGTCAGGGCTTACCACCAGAGGTCAGGAGTTCGAGACCACCCTGGCCAACATGGTGAAACACCCGAAAGATATTATTTTTAATATCTTTCGTTAAGGCAGCTAATAACCTTTCTTTTTATTTATTTTAGAGACGGGGTCTTACTCTTGCCCAGGGTGGTGTGAAGTGGTGCAATCATAGCTCACTGTGGCCTCAAACTACTGGGCTCAAGCTATTCTCCTGCCTTAGCTGAGACTACATGTGCACACTACCATGCCTGGCTAATTTTAAAACTTTTTGTAGAGGCAAGTTCTCACTATGTTGCCCAGGTTGGTCTTGAATTACTGGCTTCAAGCAGTCCTCCTGTCTCAGCCTCCTAGAGTGCTGGGATTATAGGCATGAGCCACTGTGCCCAGCCACCCTGCCATCCTTTTTTTTTTTTTTTTCTTTTTTTGAAACAGTATCTCGCCCTGTTGCCCAGGCTGGAGTACAGTGGCACGATCTCGGCCCACTGCAACCTCCGCCTCCCAGGCTCAAGCCATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGGCACATGCTACCACGCCCGGCAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACATGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCCGCCTCAGCCTCCCAAATAGCTGGGACTACAGGCGCCCGCCACCACTCCCAGCTAATTTTTTCTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTCATGATCCGCCTGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGATTATCTGCCTGTCTCAGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGCACCAGCCCACCCTGTCTTTCTTACTCCTTAAAGTAGGGGGCAAACATGGTGGTTGTTATAATCCATATAAAACTATACCCTGGACCCCCACGGTGGTTGTTATGGTCCATATAATACTATAGCCTAGAGCCCCATTCAGTCCCTTACCCAAAGTCACAAAGTTATTGAGGACCCGGGCCTCCTGACCCTTAGTCCCTCGGCTTCTTTGGCTTAAGAAGGATGTTAGGGGGAGGTGTCTGTGGTGAAACCTGCCCAGGCCTCCCTGGCCTTGTTCTGGGTTGGTGGTCATCCTTTTCCCTCTGCCCTCCAG
Seq C2 exon
CTTGTCTTTAACCGAACTGTCACACTGAAGGAAGACCCAGGAAAGGTGTGAGCTGGAAGCACTGAACCTACCTCATCCTCCTGGAGGGTGTGGCTACCCTCGCCACCCCAAATTCCATGTCAATAAAGAACAGCTAAATTCTCCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):

C1:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(4.3=41.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTACACGTGGTGGATGC
R:
TTTAGCTGTTCTTTATTGACATGGA
Band lengths:
262-2174
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development