MmuINT0130122 @ mm10
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108515107-108515941:+
Coord C1 exon
chr9:108515107-108515232
Coord A exon
chr9:108515233-108515795
Coord C2 exon
chr9:108515796-108515941
Length
563 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TTTCTTCTACTGCCTTTCAGATT
3' ss Score
11.04
Exon sequences
Seq C1 exon
GCGTCACTACAAGTGGTAGAAGGAGCATTAGTGGACTGCTCTGTGGCTTTGGCAAAGCCCTTTGACAAGTTCCAGTTTGAGCGCCTTGGGTACTTCTCTGTGGATCCAGACAGCCATCAAGGACAG
Seq A exon
GTGCTTAATTTGACCCACCTATACCCTTCTGTGTACTGATGGTGGAAGCTGTTCACTGTGATAAACACTCTCCCTACATCCCCTTAGCATTCTCCAAATAAGTTGGGAGGGACATTCATTACTTTCCAGTTAAGTCCAAGCACAAAATTTTATAGGGCTCTAACTTTTTTTAAGATTTATTTTATTTTATGTTAGTATGCTGCTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCATCATGTTGTGAATTGAACTCAGAACCTCTGGAAGAGCAGTCGGTGCTCTCAACTGCTGAGCCACCTCTCCAGCCCCGGCCCTAACTTTTTTACTCTTCAAAGTAGCAGGCAAGCTTAGAGTTTGTCATAATCCTCATGAAACTAAGGCACAGCACAGGCATCTAGTCCTTTATCTGAAATTACAGAGTTATTGACAACCTTGGTACCTCACCTCCATGATACCTCACCTCCTAGGTGATGAAGGGGAAGTAAGAAGCCCGGTTCGGGGTTGTTGGTCATTTTTCTTCTACTGCCTTTCAG
Seq C2 exon
ATTGTCTTCAACCGAACTGTCACACTAAAAGAAGACCCAGGCAAAATATGAACTGAATACATGTGGCCCTACCTCATCCTGGAGGCTGGGGGTGCCCTTCAGCACTCCACACTCCGTTTCAATAAAGAATAACTAAATCCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604:ENSMUST00000006838:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(6.1=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGGTAGAAGGAGCATTAGTG
R:
TCTTTATTGAAACGGAGTGTGGAGT
Band lengths:
246-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types