BtaINT0121002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018924 | QRICH1
Description
Bos taurus glutamine-rich 1 (QRICH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098015]
Coordinates
chr22:51518551-51524768:+
Coord C1 exon
chr22:51518551-51519588
Coord A exon
chr22:51519589-51524590
Coord C2 exon
chr22:51524591-51524768
Length
5002 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGATGATTTCTCTCTCATAGGCT
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTACAGGTACAGGTACAGCAGTCTCCGCAGCAGGTCTCGGCTCAGCAGCTCTCCCCGCAACTCACCGTTCACCAGCCTGCTGAGCAGCCCATCCACGTCCAGGTGCAGATCCAAGGCCAAGCAGCACAGCCGGCAGCCCCCTCCATCCAGACCCCATCTCTGCAGAGCCCCAGCCCTTCGCAGCTGCAGGCGGCCCAGATCCAGGTGCAGCACATGCAGGCGGCCCAGCAGATCCAGGCTCCAGAGATCCCGGAGGAGCACATCCCGCACCAGCAGATCCAGGCTCAGCTGGTGGCTGGCCAGTCTCTTGCTGGGGGTCAGCAGATCCAAATCCAGACTGTGGGTGCCCTTTCCCCACCGCCGTCTCAGCAGGGCTCACCTCGGGAAGGGGAACGGCGGGTTGGCACAGCCAGTGTCCTCCAGCCAGTGAAGAAGCGCAAAGTGGACATGCCCATCACTGTGTCCTACGCCATCTCAGGGCAGCCAGTGGCCACTGTACTGGCCATTCCACAGGGCCAGCAGCAGAGTTACGTGTCTTTGAGGCCCGACTTACTGACGGTAGACAGTGCCCACCTGTACAGTGCCACTGGGACCATTACTAGCCCTACAGGAGAAACTTGGACCATACCTGTTTACTCTGCCCAGCCCCGGGGGGACCCTCAGCAGCAGAGCATTACCCACATTGCCATTCCCCAGGAAGCCTACAACGCAGTTCACGTCAGTGGCTCACCCACAGCCCTGGCAGCTGTGAAGCTGGAGGATGACAAGGAGAAGATGGTGGGCACCACATCTGTAGTGAAAAACTCCCATGAAGAGGTAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACATTCCAGTGGCTGTGCAGGCCGTGGCAGGCACATACCAGAATACAGCTCAGACTGTCCATATATGGGACCCCCAGCAGCAGCCACAGCAACAGACCCCCCAGGAACAGACGCCGCCGCCGCCTCAGCAGCAGCAGCAGCAGCAGCTCCAGGTTACTTGTTCA
Seq A exon
GTAAGTGAGACTTACCTGTAGGGCAGCCTGCCTCCCTGGGGCCCAGTGCCACACCGAACTTGCTTGGCAACCTCTGGCTTGTTTACTAGAGTGATGTTGGCCTTGCAGTAGTAATACAGTATTTAGTGTTTTAATTAGGATTGGGGAGAGGGAACGGGGTGAGGGTATGGAATAGGCAGGCATTCTAGCCTGGTGTCTGGAGGTAAATGACCAGAAACTGCTTTGGGGGTAAATGCTCAGAGTGCTTTTTTGTGGTCTCTTTTTAGGAAAAGTAAAGTTTTAGGTTGAGACTAACGGGTCACCCCAAGTGTTATTTTTGTCCCAGAAGCTGCTTTCTGCATCGCAAATGAACAGATCTAGTGGAACTTCTGTAGTTGAACACACAGGCTGTAAATTCATTACAGTGGAGAAGCTGTTAAATTGTTCCTTCTTTAGTTGTCATCTAAAGATGGACTACACTGGACACAGTATAGGTGAATTAGGAGATCTAAAAGATTTCCTGGTGGGCCTGTTAAAAGTGATTATCTTTGGGGAATTCTCTGGTAGTCCAGTGGTTAGGACTCTGTGCTCCCACTGCAAATGGCATGGGTTCGATCTCTGGTCAGACGACTGAAATCCTCTAGCCTTGTAGCATGGCCGAAAAAAAGAAAAAAGTGATTATCTTTGGGACTCTTAAATAAGCAACCTTTACAAGTGGGACTTTCCAATGATATTTTTATGTTTCTTAAAAATACTAAGATAGGTCATGGTTAATGAGTTTTCTGTCATGGCATCTATGTTGAGCTAAGTTTTTTAACTTTTTCTTTTGAAATGATTTTAGATTTATAGATAAGTTGCTAAAATAGACCTGTCGAAATTTTAATTTTAAAATTGCTTGGCTCTTTTTGGTAATTGTTAGTCTTCTTGAGGCTGTCATAGGTCCGCCTGTTAAGACTATTAGTAAAGTTTCTGGTCCCTTGTCTAGCAGACATTTAGACTAGATGTAGAGCCTCTGGTCTCATGAGACTGCTGAAGGCAGTGTGCCTCAGCACAGGTGCTCTGGGAGTGCATGTGAGGGAGCTGGCACCAAGAAAGCACTGTCAGACCAGGGACCACACTCAGAAACTCAAGCAGTAAATGATTGGATAAGCAACAGCTGGCCAAGTGGTTTCATAGAGGCAACAGTGTATTAATCCTAGGTGACTTTATTAAGGACCTGTTAAAATCCAGCTGTCAGGCCTAGGAGTAGAATAGGACAGAGTCATTGCTTCAGATGGCTGATAATCTGGTGGAAGTAAGAACTCATGGTTTCTGTTTCTTTATAAACTCTTTATAGAGCAACATAATCAAGTGTGAATGTATACTAACACAAAAGTCAGGCGGGAATTCAGAAATCGTTCTGGGTTAAAACAGGAGCATCTTTGTGGAAAAACTGGCATTTGATCTCTTGTTTATAGCTTAGATTGACAGAATGGCACAGCATGAATGCAGAGCTACGGGTGGGCACAAGGGGTATGCCTAGGTTAACATGAGAGGAGGGAAAACTGTGGGAGAGGAGTTAGTGGAGGGGGCAAAGGGACTGTCTTCCTGAAGTGAAGAGTTGGTATGGTCTGTGGTGGGAAAATTTCCAGAATCCTGCCTGAGTGATGGTATTCAGAAGAATCAGATAGTGGTGTGTGGAATAGATTCGCGTGTAGGAGAGACCACCCAGAGACTTGTCATGGTGCACTGTGCTGAACTTCAGCCTCTCCTCCACTCTCCTGGGCCTGATGATCCAGTTTGCAGTTCAGGGCCCTTTTGTTGCTCAACGGGCTCTACTAGTAATTTGCACATCTGGGCCCTTCAACTGGAAAATCTTATTCTAGAGTCCATTTTAGTAAGCCTGTGCTCTTCATGTTCTTCAGAGGCTGTATCTCCTTTAGCAAAGGAGACACACATGTCCCTTTATAGGGACATATGTCAAAGATTATTGCCAGGAAAAGAAATATTGGGAAGAATGCCCATCATGCAGGAAAGATTAGCTTGCCCATTTACACCACAGATATCCCTCTGTTCCCCTTATTGGGCTCTGTTCTAGGTTTTGGGGAACAGAGATGAATAAGACAGCCTCTGCCTTTGGAGCCCTCATAGCCCATGTGAAGATAATTGTGCTGTGATGTGAGTTGAACCCTAGGGAGAGCTGATGTGTTCCTTCACCTGACATACCCCTTTTGAAAGGTTTTTTATAACTTGTCTTTAAAACCAGATTTGTGACAAAACCTCCCTCCCTTGACCTCACACCCACCTCCATCTGTTCCCCTCTTTCTCCACTTTGCTTTATTCCCAGAGTTTTCACAAGCATTATCTGCACAGGCTGTCTCTACTCGCTGACCAGTTTCCTCTTCCAGCTCATGACCAACCCAGTCTGCTCTTGTCAAGGTCATCGTTGACCTGCCTCCCCATGGCCAGATCCAGCAGGCATGTCTGTTTTTATCTCATTCACAGCAACACACAATAGAGCAGACCAAGCCTGCCTTCTTGAAACTCTCCTCTGGACTTCTGTGTTATTTCCTCCCACCCTACTGGTTATTTGTCCTTCTCAGGAGACTTTGCTGAAGTCTCTATCTCCTCTGTCTGAACCATACACGTTGGTATTTCTCAGAGCTCAGTACTAATGCTCTTTTCTCCCCTAGGGGATTTCTGTCCATTGCCATGATTTTCAGAATCCTCTAGATGACTGCTGCAGAAGGTAATAATCCCTGACACCTTCTGCCAGGCACTGTCCATAGTGTTACATGTAATAACTCTTTTAATTCTCACACCAACCTTAAGAGGTATGTACTACTATCTCCATTTTACAAATGAAGAAACTGAGGTACAGAGATTAAAGTCACCTTTTAGCAAGTGGCAGAGTTGACATTCAGCCTTGGATAGGTGGGCTCCTGAGCCCATGTCTTAACCTGTGTGCAGTCCATGTACTGCAGTGACGCATAGCTCTTTATCTCTAGACTGTGCCTTTCCCCTTCAGACCCTTACTATACTTTCAGCAGCCCACTTATTATTTACCTGCGTTTGGTAAAGATATCTCAGCTCTTCGTCAGCATCTCCTCTACCACTATCAAAAACTATTCGTCTCAGAAAATGATACCATCATCTACCTAGTTATGTAAGCCAGAGTCCTTGAGTCTGCGTTCCCTTCCTCCTCAGAGTCAGTTCATCAACAAGCCACATTAGTTCTGCCACCAAACTTCTCAGAATCTCTTAAATCATTTCACTGCCACCATCCTGGTCTTGGCCACCAGCACCTACTTCCACTATTCCATTTTCTATAGATCAAGAATAATATTTTTAAAATGTAGGATTATGTCACTTCCCAACTCTTTAAGGGCTCCATTTTAAATAGGAAAAACTCTACACCAGGGGTGCACTTGTATCAGTAGTTTTTAACCTGGATGAAACTTGTGTTTCCCCTACCCACTGATAGACATTTGAATGTGTGTGGAAGAATTCTGGTTGTCAAGGTGGTTGGGAGTGTTACATGTAGTGAGTGGAGGCACACTGTGAAGAGAACCTGGCTGCTAAGACAGTAGAGAAGCACTGCTCTCACCTACTAACCCTGTCAGACTCCTAGATTTCTTACTTGGGTAGATGGTGTTGCCATTGAGCAACAGGGAGGAAAGTCTGAGGAGAATACTTCTGGGTGGGCAAAGTGATGAATTCTCTCCCTAGATAGTAGTTTGAGGTGGCTTTGGGATGTTCAGTCCGAGATACACAGTACCCATTGAGTATATTAAGGCATGGTCTAGCTTAGAGGCACGTAGTTAGCAATCATTTCCACAAACATGGAGATCCTAACTGGGCAAGTTTTGGAGACTCACCAAGAAGAATGGTGGTTGAACTGAGAAGTGTGTCTGGAGGGGAGCTCCAGGGTCAACAGACATTTAAGAGTCTGGCACTGGTATTTGTTTATCTCCTTGTTTATCTCCTTGTTTAATAATGTATCTTATATCAAAGCTAGTAGGACAGTTTTTATTTTTATTGATTGATAAGCAAATGTATGTGTCATATATTCATTGTTTAGCCTTCAAGTTGAATGATTTGGCATTTTTCAGCCCTTTAGGTAGGCCCTGGCATAGAAAATTGTTCAAGGGAATTTGTTTTACAATGCAGACAGGTTTGTGAGACCCAAGAACCTGTGCTTTGTATCTGTGTTGGTGTCTATCCTGCCTGATGGGGACTGTGATTGAGGGTCATGGACATTCTCTGTCCTTTTGTCTGCACAGTTTGGCTCTCAGACCATTGAGGATGGGACTGTTCTTGATTTGGAGGTGGGAAGCTCAGACAGTGCTTCCTGTCTTCAGAAAATGTCCTTATGAGCCAAAGCAGTATTATTGAGAAGGAACATGATGATTCTCAACCAGGACTGGACATTAGAATAACCCAGAGAGCTTTTAAAAATACCGATGGCAGGCCACCACCTTAGACCAATTAAATCAGGATCCCTAGGGACAAGGCCCAGGCATGGATATTTTTTAAAAGCAGCCCAGATGATTTTAAGGTGCAACTAAGTTTAACAGTCTGGACACTTGGTACTGAAAGTGTAGTCTGAAGACCAGCTCCCTTCCTTGGGGGTTTCTTAGAAATGCAGAATCTCAGGTCCCACGTGAGATCTTCCTAATCAGAATCCACGTTTTAATAAAATTTATTTGCACATTGTAGTTGATGAGCAGTGCTTTGTGCCAGTAGCTCTGGGCAATGACCAAAGATTAGAATTGCCTTTTTACATGGGAAGATTTGTCTGATACCTCTTTAAAAAGAGATTCTGAGGTGGAGCTCAGGTATTCGTGTTTTAAAATAAGAGATTCAAAAGTACAGTTAAGATTAAGAAGCTTTGCACTAGCCATTGCTGTCTCTGAAATAAAGAACAGGACTCCAAAGTTTAGGACAGCAAGCAGAAGTGCAGCTTTTTAGTTAAAAGAGAGCATTTTTCTGGCAGTTTTGTCAAATGACCTATTGACACGTTTTGATGATTTCTCTCTCATAG
Seq C2 exon
GCTCAGACTGTCCAGGTTGCTGAAGTTGAACCACAGTCACAGCCACAGCCTTCACCAGAACTTCTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAGGTGTGGAAAAACTGGGCGCAGACCAAGAATGCTGAGCTTGAGAAGGATGCTCAGAACAGACTGGCACCCATTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018924:ENSBTAT00000025183:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]