GgaINT0020307 @ galGal3
Intron Retention
Gene
ENSGALG00000006867 | QRICH1
Description
NA
Coordinates
chr12:11886386-11890296:+
Coord C1 exon
chr12:11886386-11887405
Coord A exon
chr12:11887406-11890118
Coord C2 exon
chr12:11890119-11890296
Length
2713 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGAAATATCTTCTTTCATAGGCT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GTTCAGGTCCAGGTCCAGCAGTCACCGCAGCAGGTCTCCGCCCAGCAGCTCTCTCCGCAGCTCACTGTCCATCAAGCTTCTGAGCAACCGATACAGGTCCAGGTGCAGATCCAAGGCCAGGGGCAGCAGCAGGCGTCCCAGACAATACAGAGTCAGTGTCTTCAGAGCCCCAGCCCGTCTCAGCTGCAGGCAGCTCAAATCCAAGTGCAGCACGTGCAAACTGCCCAGCAGATCCAGGCTGCGGAGATACAGGAGGAGCACATACAACACCAGCAGATCCAAGCACAGCTTGTGGCAGGACAGGCCATTACTGGTGGTCAGCAGATCCAGATCCAGACAGTGGGGGCGTTGTCACCTCCACCTTCTCAACAAGGCTCTCCGCGAGAGGGAGAGAGGAGGATCAGCACCGCTAGCGTCCTTCAGCCGGTGAAGAAACGCAAGGTGGATATGCCTATTACTGTATCGTATGCTATTTCAGGGCAGCCAGTTGCCACAGTGTTGGCCATTCCTCAGGGCCAGCAGCAAAGTTATGTCTCTCTAAGGCCAGACTTACTAACAGTGGACAGTGCCCACCTGTACAGTGCCACTGGGACCATTACTAGCCCCACTGGAGAGACTTGGACCATCCCTGTTTACTCTGCTCAGCCACGTGGTGACCTTCAGCAGCAAAACATAACCCACATCGCCATCCCTCAGGAGGCCTACAATGCTGTCCACGTCAGTGGCTCCCCAACGACACTGACCACAGTGAAGCTGGAAGATGACAAGGATAAGATGGTGGGAAGTACTTCAGTAGTGAAGAACTCTCATGAGGAAGTGGTGCAGACTCTTGCTAATTCACTCTTTCCAGCGCAGTTTATGAATGGCAACATCCACATTCCAGTGGCAGTGCAGGCTGTGGCCGGGACATACCAGAACACAGCACAGACAGTGCACATATGGGACCCGCAGCAGCAACAGCAGCAGCCCACACCCCAAGAGCAGGGGCAGCAGCAGCAGCAACTACAAGTCACTTGCTCA
Seq A exon
GTAAGTTTAACTTGCTTGGGTCTTGGTCCTCAATTAACAACTTGCAGATGTTCTGGGGAGAGGGAATGTGAGCAGACAGCTTGTATCGAGGAAGCAGAGATGCCTGTCTTCCTCTGGCCCGGGTGTGACATGCAGCATTTGTCTTTGGATGTAGGACTGCCACACGTTAATACTGGTACATATTTATAGAATGCAGAACTTCCCAAAAGAAAGTTCTGCATTGATCTCTGTAACAGAAATGAATAAGCAAGTGCGTATTGCTAGCTTCCCCATAGCAGCTATTTCAGGGTCTATAGTCTTTTTTTTTTTTTCCTGAACTGTTTGAAGGAAAGGTGAGGACCACAGCAACAAAGTCAGCTGCATAAATGCTCTAGCGGCCTAGTTGTGGTTACTTTGTGTTATGTGGCATTTGGAGTTCCCAGCAGATCCAGTGCCCAGTTAAAATGTCAAGATCTGACTAGTTGTCAGAGCAGACTTCATGGATCAGGTGTACCCATCTGTAACGCTGACCTGTTTCCACTGAATGCCTGGCGTGCAAGAACACCATAATGACCAATGGCAAGTAACTATCTCTTTGTCATGCTTGACAAACATAGCAGCCAAATTTGCTGATCTTTTTAAAAAGGGTTTTTAATTGGGTTTTAGAACTTAAATGAATAGGGAATTAATGACCTGTCTTATATGTGCAAATGAATGTAGTTTATCTTTTTTTTTTTACTTAGAAGGTGTAGAGATTGATCTGTGTCAGAGCCTGTTCTTGCTGAATGGAACGAGAGCAAAAATACCCACATCTGCTAGCACAAGTGTTATTACAAATTCCTTCCAGTTTATAAATAACACTTAATAAACACACACATGCCCTCTATTTCATCAGTAAGCAGTGGGACAAGGAGGATTGCTTTTTGGCTATCACATCTGTTTCTGAATCGAGTCATAGCCTTGGTGGGCTACAGCACATGTCTTCAATGAAAAGGGTTCCCTGCATGTCTTGAAGTGTCAGTTGCTGGGTGCACTCTTCTGTGAAGCTGTACTTTAACCTACAGCCTGTAGGTCATGTAATACATCCGTTGTTTTCTTTTGCTGTTGTCTATTGTTTGTTTGTTTGTTTTGTTGATTTCAAAGAGCTTTCAGTATCTTATTTTTTTTCCCCTATATTGGTCTATTAGAGATAACTTTATTCCTTTCAATTACTCAAAATAAGTTGACTGAACTTCTTGCCTTTCTGCTGAACAGGTTTTTGGGGGAGGTTATTTCAAGGGTCTTTTAAGAATACATTCGTAGAATCCTTTCCAAAGTATAAACTCCATAATTTCTCTGATTTCTTGTAAAGCTTCTACCAATGCTGTGTATTCCTGTATGTAGTGGTCCACAGTACTTGGGTATCGAGACAGTATTCTGATTAAAAGTCTGTGGAGTTCTGGGTACTGCATAACCTAAACATGGAAGCAATTCTGGAAGGCATGTGCTCTTCTTCTAGGAAGGATGATAAAGCTGCTGTAGGTGAGCATCTCACTTCTGGGTGGTGTCTGTCTCACAGCTGTGAGACTATGTGGTACTCCCTGTCAGTGTCAGCTTAGTTGGGACAAGCCTTAAACAGCTATTTTGTTCTCTTTTTGAAGAAACACAAGAAGTCATTTAAAAATCAACTTCCAGACCAATGACTCCAGCCTGTGTGTTGCTTTCACACCAGATGAGACAGCTGTGAGGTCAGGGCAGCAGATCCCCCATCTAGATGGGGCTGGCAGGGCTGGTTGCTCTCTGTTGCTCAGAGGCTGACGGGGCAGTACTCCAGAGGGGAGCGGGGGCAAAATCCTGGCTCCTATGGAGATGGAGTGTCAGTTCTCACCCTTGGGCTCCTGTCCTCTTTGCAACAGAGGCTTGATTGACTGCTTTGCCATCTGCCTCCATAAACCTGAGGCCTTTCAGTGATAGTCTCCCACTGCAGCTATGGTGATGGAGGGGCTGATATGCAAACAGGAGTTGTGAGCTGATGCAGGAACAAACAAAGCAGCAACAGAAGCACAACAAATCTGAGGTAGGCAGTCTGAAAGCTCCAGTCTGAGGCTTTTACAGGCATCACCTGTCTCATTGTGGTGTTGTGGTGGCTTTTTTTTGGTGGTGTTTTGTTTCTGGTCACGTTAAATTACAGGTATTACTGATGTGTACAACATTTTCATCACGGACTCTTAATAGTGCCAGAGCAATTGGGCCTCTCTTGCTGTAGTGAGGTGGTGGTCTTTTGTGATGGCTCAATGTGGCAAGTTGTATAAAGTCAAGAAAAACACATTTGGAGCAAAATCAGTAGTTCATTTTGCTGTTGGAGAAGAGACCAGAAGTCTGTTTGTGAGAGGATTTCAGCTCTATGAAGTTTCTTGTCAGTGAACTAGCTTCTCTGTGACACTGCTGCAAGAATCACACGTGGCTGCTGGGTCTCCTGTGATGTCCTGCAGGACTTTTGAATGCATCAATCAGCAAGTAGTGTGTGTTTGCTGAAGGGATTTTAGATATGTCCATTAAAAAAAAATACTTGGAGAGACAAATGTTCTTTCATGAGCAGTAAGCTAGACAGCAAAGATTACGTGCCTTGGACTAATCTGGAGAGGGTGTTGCAAAAGGCTGATGTCCTGGGGCTAGAGGTAGCACTGCAGTTAATTGTTTTCTATGCAACTGTTGTATTTAAAAGTATCTACAACTGAAATATCTTCTTTCATAG
Seq C2 exon
GCTCAAACTGTTCAGGTTGCTGAAGTAGAACAGCAGCAGCAGCCGCAGACTTCACCTGAACTTCTACTTCCAAACTCTCTGAAGCCAGAAGAAGGGCTTGAAGTGTGGAAAAGCTGGGCACAGACCAAGAATGCAGAGCTGGAGAAAGAAGCCCAAAATAGGCTAGCACCTATTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867:ENSGALT00000011121:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]