MmuINT0130166 @ mm9
Intron Retention
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108435918-108444196:+
Coord C1 exon
chr9:108435918-108436949
Coord A exon
chr9:108436950-108444018
Coord C2 exon
chr9:108444019-108444196
Length
7069 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCATGATTTCCCTCTCATAGGCA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTACAGGTGCAGGTGCAGCAGTCTCCACAACAGGTCTCAGCTCAGCAACTTTCCCCACAGTTCACCGTTCACCAGCCTGCTGAGCAACCCATCCAGGTCCAGGTGCAGATCCAGGGCCAAGCACCACAGTCCGCAGCCCCCTCCATTCAGACTCCATCTCTGCAGAGCCCCAGCCCCTCACAGCTGCAAGCAGCTCAGATCCAGGTGCAGCACGTCCAGGCGGCCCAACAGATCCAGGCTGCAGAAATCCCAGAGGAGCATATCCCACATCAACAAATCCAGGCTCAGTTGGTAGCTGGCCAATCTCTTGCTGGGGGCCAGCAAATTCAAATTCAGACTGTGGGTGCTCTTTCCCCACCACCATCCCAGCAGGGCTCACCCAGGGAAGGGGAACGGAGGGTTGGCACAGCCAGTGTCCTTCAGCCAGTGAAGAAACGCAAAGTGGACATGCCTATCACCGTGTCCTACGCCATCTCAGGGCAGCCAGTGGCCACTGTGCTGGCCATTCCACAAGGCCAGCAACAGAGTTATGTGTCTTTGAGGCCAGACTTACTGACAGTAGACAGTGCCCACCTGTACAGTGCCACTGGGACCATAACTAGCCCTACAGGAGAAACTTGGACCATCCCTGTTTATTCTGCCCAGCCCCGCGGGGATCCTCAGCAGCAGAGCATTACGCACATTGCCATTCCCCAGGAAGCCTACAATGCGGTTCATGTCAGTGGCTCACCTACGGCCCTGGCAGCTGTAAAGCTGGAGGATGACAAGGAGAAGATGGTGGGCACCACATCTGTAGTGAAAAACTCCCATGAAGAGGTAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACATTCCAGTGGCTGTGCAGGCTGTAGCAGGCACATACCAGAATACGGCTCAGACTGTACATATATGGGACCCACAGCAGCAGCCACAACAGCAAACTGCACAAGAGCAGACACCACCACCACAACAGCAGCAGCAGCAGCTGCAGGTCACTTGTTCA
Seq A exon
GTAAGTAAGACTTAATCTGTAGGGTATTTTGTTTTGCTTCCTTTGGTTCCAGTGTAACCTACTGAGTACCTGTAGTGTCTGAATTATTTAATTCCATTATGATTGTTGTAACAATGATAGTGTATGGGGGAAGGAAGAGAAAGAAACAGTAGATGAGGTGGTTATCATTCTTGGAATTCAACAAAATGACCAGTTTTTAGAGAGTATTCGGGTAGGGTGCTGTCTTAGTTGGTATTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCCTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCCCCAAGGCAAGTCTTATAAAAGACAACATTTAGTTGGGACTGGCTTATAGGGTCAGAGGTTCAGTCCATTATCATCAAGATGGGAGTATGGCAGCATCTATGCAGAGCTGAGAGTTCTTGATCTTCATCTGAGGGTAGCTAGTAGAAGACTGACTTCCGGGCAGCTAGGATGAGGGCCTTAAGCCTCAGTGACACACCAACTCAAACAAGGCCATACCTCCTATTAGTGCCACTCCCCGGGCTAAGCATATATAAGCCATCATAGATACCTATAATATTTCTTTGTAATAGCTTGTTATGATAAGTGAAGTTAATGCTATGAAGAATGGAAGACCCCAAAGTGTGTTACATACTGTTCATGGAATACTTATATTTACAGCTGTAGTTGAACCATTAATTAATTTAGAACCATTAATTTGGGTTTGTTTTTTTTTTCTTTGTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTTGTTTGTGTTTTTCTTTTGGGGGGCGGGGGATTTCTCCAGACAGGGTTTCTCTGTATAGCCCTAGCTGTCCTGGAACTCACTCTGAAGACCAGGCTGGCCTTGAACTCAGACATCTGCCTGCCACTGCCTCCCAAGTGGTGGGATTAAAGGTGTGCACCACCACTGCCTGACACAAATAGTAAATTCTTGGTAGAGAGCTTATAAGATAGCTTTTTTCCTTTATATCTTTGAATATGGTATAAATAAATGGTAAGAATACCTCTTAGTGGGTCTATTGAAAGGTACTGGATGTGGGGGTGTGTAACTGTAATGCCTGCACTTGGGAGGTAGAGGCAGGTAGATCAGTGAGTTCAGGGCCAGCTTGTTCTTAGCAAGTTCCAAGCCATCCATGGCTACATAATGATACTTTGTCTCAGAAAACAAAGATGGGGAACAGTGGCAAAAGTAAAATTAGCAACTGGCCCATTGTTGCACATATCTGCATAATACCAGAACTTCAGAAAAGTAAGATCACAGGTTCTTCAGGGTCAGCCTAGGCAACATAAAACAGAACAAGACAGTTTCTTCCATGTTTATACCACTTAATAGCTTGTGGGGAAGACAGTTGTGTTGGATTGACCCTCAGGAAGAGCTGGTGAGAAAGTGTTGAATTCCGCCGCTACAGTGAGTTGAGGAGAGCAGGGCTGTTTCTGAAAGCCTTCACCCACAGTTCCTGTCTGTACGCTATATTCACAGTGAAGCTTCCTCTCTTGATTTAGCTTTCACCCGCTCTGTTTCTGCCTCTTAAAACAGTATCTGTAGAAACTGGAACTCCACTTTTATCCATTTTTCTATTGGGGTGTGACTAGCTCTCTTGCCTCAGCCTCTCAAATACTTGAGGTGAGATGAGGTGAGATGTGTATCTGGCTTCAGTTGTGGGTTTTTGTTGTTAAGACTGTTTGTTTATCTTTTTGAGATGGTTAGAAAACTTGGGCTGGAGATATGGCTCATCGGTTAAGAGCACTGACTGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCTCAACCATCTGTAATGAGATCTGACTCCCTCTTCAGGAGTCTCTGAAGGCAGACAGCTGCAGTGTACTTACATATAATAAATAAACCTTACCAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAATGAAATGTTAGAAAACACAGAAAGGATCCTGGGTGTGGTAGAGCACACCTGAAACCATAGCAGTTAGAACAAGGGAGGCAGGAGGCTAAGGTCAAGGTCATTGTTAGCTACATATGAGTTCTAGACCATTGCACAGTACATGAGACCTTGTCTTTAAAAATAAAGATAGGGTTAGAGAGATAACTCAGCAATTAAGAGCACTTGCTGCCCTTCTACAGAGTCCAATTCTTAGCACCCTCATTGTGTGGCTTACAACTCCAGCTACACAAACGGACCCTCTTTGGCCTTCAAGAGCACTTACTAACATGTGTACGTACAAAATACACAGACAGAAAAGGGACTGCAGAGATGGCTGGCTCAGCAGTTAAGAGCGCTGGCTGCTTTTCCAGAGGACCTGGATTTGTTTCTCAGCTCGTACACGGTGGTTCAGAACTGTCTATAACTTGGGTTCCATGGCATCTATTGCCTTCTGGTGTTACTGACCCCTCCTACCTCATTAGTTTTGTTTTGGTTTGTTTTGATTTTGGTTTCTCAAAACAGGTGGAGTTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCTGTTTATCCCTGGCTGTCCTGTAACTTGCTCTGTAGACTAGGCTGGTCTAGTTATGCTACATTCAAGTAGTCTCATACAGCCAGGCAGTGGTGGCGCACGCCTTTAATCACAGTACTTGGGAAGCAGAGGCAGGCGAATTTCTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAATAAATAAATAAATAAATAAAGTTTTTTTGAAAAAAGATTCATATAAAACACACATCAGACATATTTACCAGAACTAGAAGTAACATTTGATATTTTACTGACACATGTATAAATATAGCGAAATCGCTTTTTGGATGGCAGAGAGCATGGAGACACCGTGAATTGTTCTCCATTATCATGTCTCTGCATCTATACATCCTAACTTGAGCTAACACATTATGCAGCCAACTGTAGGGGAAAATTGATGGGAAGGACACTGTGAAGAGACCACACAAAGGAATCAGTTGCTGTGAGATTTCTTGGCCCAAGCTTGAGAACGGAGAGTGTACAGACTCTCAGGTGATGGTGGCCCAGGTCCAGTAATAAAGGAAAGCCTCACTCCAACCACCTACTCCCAGGGACCACCCAGATGAGCTCATGGAAAAGGCCTGGAGACTCTACTGAATGCCATTTTCTTCTTGCTTTGCACTTGACTATGTACTTTGGCTTGTGAGGTCTTCCATAGAAACTGGAACTTTTGAGATAGATAAACAACTGCTTCTAAACAAATTTGTGTTTTCCAAAACAGTGTTTATATCTGTTGTCCAGAAAGTGAAATAAAATTTAAAACATGCTCAAAAAAAAAAGAATAGAATAAAAACAGAACACAGAAAGGGTTGAGTGTGCAAGACAGCCATGGAAATAAACTTGATTTCTTTCTTTTCAAACTATAATAGAGCTGAATATGTAGCTTGGTGGTATGCATATACATTACACAAAACGAAAAGTTAACGCCAGGTGGTGGTGGCGCTCACCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAGAAAAAAGAAAAAAAAAGTTAAAAAAAATACTAAGTAGTGATTAATGAATTACTGGCTAATAAACTATCATGTTCTATTCTGTTTTTTATTCTGTTTTTTCTTTCTGAATATTTTTCCAAAAGAAATTGTTTTTCTCTTTTTTTTTCTTCTTTTTGGGGGGGAGATGTCAAGATGGGGTTTCTTTGTGTTGCTCTTCATTCTGTAGACCAGGCTAGCCTTGAACTCAAAGATCTGCCTGCTTCTGCCTCCTGAAGTGCTAGGACCAAAGTCATATTCAAAAGATTTGTGTGTCTGTGGATACCTATACCCATGTGCACGTGTTAGGAGGACAAAGAATAGTGGTTCTACTCACTTAAGTTTTATTCCCCTGAGACAGGTTCTCTCACTGACCGTAAAGTTCATTATTTTGGGCTAGTATGATCACCAATGAGTTCCTAGGATTTTTCTGTCTCCTGGCCCACAGTTGAAGTTATAGACATTCTTGGCCATACCTGGCATCTTTTTGTGGGTGCTAGGTCATCTCCCCAGCACCTCTTTGTTCTTTTTAAATTTTATTTTATATGTATGGGTGTCTTGCCTACATGCATGTCTGCTCACACACTATGTGTGTGTCTGATAGTTCTAAGAGGCCTAAAGAAAGGCCAGACATAGTGGTGCATAATTTTAACCCCAGTACTCAGAAGGCAGACACAGGAGGACCTCTGGGAGTAAAAGCCAGTCTGTTTGTTCTAAGTACTGAGTCAAGGGATAACCAGGACTATAGAGAGAGACTTCAGTCACACTCACACACTCTCTTCTCTCCTCCTCCTCCTCCTCTTCCTCCTTACTTCTCCCCCACCCCCCACTCCCCAATACACACACCCCAGTTAGGATTTGGGATTGGTGGCACATAACTTTTTAATCCTTGCGCCTTAGACAGAGGCAGGTGAATCTCTGAGTTGGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGAGCTATACAGAGAAACTATTGGGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTAATGGATTATGTTCTTAGGAGTGAGAATATTGTTTGAACTTTAAGCTAGTATGGTGTCACATGCCTGTAGTTTCAGAACCACTTAGGAGGCTGAAGCAGGAGGATCAAGAGTTTAAGGTCAGTCTAAACCTATGAAAAAAATAGGATTTTTTTTTTTTTAAAAGACTTATGTCAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTACAGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAATCATCCGTAACGAGATCTGACTTCCTCTTCTGGAGTGTTTGAAGACAGCTACAGTGTACTTACATATAAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTATGTCAGGCAATGGTGGTGCATGCTTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTATCTCGAAAAACCAAGAGGAAAAAAGTTTTGTTTGTTTGATGCATATGAGTACACTACCATTGTTCTCTTTAGACACACCAGAAGAGGGCACCAGACCCCATTACAAATGGTTGTGAGCCACCATGTGGTTGCTGAGAATCGAACTCTCAGGATTGCTGGAAGAGCAGTCAGTGCTGTTAACTGTTGAGCCATCTTTCCAGCCCAATACAAGGATCTTATAATCTAGAAAATCATCCATGAAGATTCTGAAGTCTTTTCCTTTGATTTTACGATGGCAACAGTGTCTTCACTATTTGTCTTGTCTTTGTAAATGGTTGTTCTATCATAGGCTGCTCCTCTCTCCCTAGACTCCCCCATGCTGGGATGATAGGCGTGTATCATTCCCACCTCAACAGGAAAACTTGTTTTGGATGAGGTTTTCCTGAAATTTGCTGTTAGTTCAGGGTGACCCTTTGCTGCTTCTTCTGCAGCCTCCACGTTTGCTCTTCTTGCTTTGCAGATTGGAGAAGCTGTCATATCTAGTTTCCTAAGGTGCTGGACACTGCCTCTAGGGTATTGTATAAGTTGCAAGCCAAGTACTCACCTACTGCTCTAGCCTTGCTGGTGTGGATTCCGGTCCTCCTCATAGATGATCACTCAGATCATAGTTTGAGACTAGAGCTTTCTCAGGTTCCAACCCAGATGTGTTCAGTAACTTTATAAACATTTTTATAAAATGCATAAGTGTTTTATTTGCATAATGAAGTTTTGAAGCAGTGTTTGAAAATAAACCTCTATTTTCTTAGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTAGATAGTTTTACTGTATATCCCTGGCTATCCTGGAACTCACAAAGATCCAACTGCCATTACCTCTCAAAGTGCTGGAGTTAAAAGGCTTGTGCCACCACTGCCTGGCTTGCTTTAGTAGGTTTTAAAAGATTTGAGACTTGGCTTCTGCTCTTTGGAAAGGTTCTAGGGCAGTTTGCAGTATTGGTGTTGTAGGTTTTTTTGTTTTCTTTTATGTGTGTTTCTTTTTCTTACCTGTTTTGGCAGGATGTGGTGTGGGGGTACTTCCAGATAGGGTTTCTCTTTGTAGCTCCTGGAACTCAATTTGAACTAAAACTCAAAGAGATCTGCTTGCCTCTACCTCCTGAGTGCTGGGACTAAAGATGGGCATGACCACTGCCCAGCTCTTTTTTTTTTTGAGACCAAGTCCTTCTTAAAGCCCTGGCTGGCCTTGGATTTGCCATAAATCTCAGGCTAGTCTCAAACTTGAGGTGACCCTGTGCCCTGCCTCAGCCTCTAAAGTACTGGTAGTACAATCATGTATTGCCACCCTGGATTTATATGGATGTTTTGAAATGAGAATCGAGGGCTAACAAGATGGCTTAGTGAGTAACAGCACTTGTTCCAAGCCTGACATCCTGAATTCAGTCCATCCAGACCCTCAGAACCGTAGAGTGGAAAGAGAACTGTTGCAGTCTGAGCTGAGGAGTGCCGCTTTGGCTTAGTTACATTGCTGCTTCTGTTGTCCCCAGAGCCAGATAGACTCTCCAAAGCATGAAAACGGGACAGCAAGAATTGGTTTTGGTTGTTGTTTTTGTTTTTCCCAATTGAATAGCAGTTAAGTTTCATTTGCTGGTATTTTTACTAAAAGTCCTAATGAAAAATACTGACAATTCTCATGATTTCCCTCTCATAG
Seq C2 exon
GCACAGACTGTTCAGGTTGCTGAAGTTGAGCCACAGTCACAACCACAGCCTTCACCAGAGCTTTTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGATGCTCAAAACAGATTGGCCCCCATTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673-Qrich1:NM_001114119:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: