RnoINT0121231 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117323994-117332388:+
Coord C1 exon
chr8:117323994-117325025
Coord A exon
chr8:117325026-117332210
Coord C2 exon
chr8:117332211-117332388
Length
7185 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGATGGTTTCCCTCTCATAGGCA
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTACAGGTGCAGGTACAGCAGTCTCCACAGCAGGTCTCAGCTCAGCAGCTTTCCCCGCAGTTCACCGTTCACCAGCCTGCTGAGCAACCCATCCAGGTCCAGGTGCAGATCCAGGGCCAAGCACCACAGTCCGCAGCCCCCTCCATCCAGACTCCATCACTGCAGAGCCCCAGCCCCTCGCAGCTGCAAGCAGCCCAGATCCAGGTGCAGCACGTGCAGGCAGCGCAGCAGATCCAGGCTGCAGAAATCCCAGAGGAGCATATCCCACATCAACAGATCCAAGCTCAGTTGGTGGCAGGCCAATCTCTTGCTGGGGGCCAGCAGATTCAAATTCAGACCGTGGGCGCTCTTTCCCCACCACCCTCCCAGCAGGGCTCACCCAGGGAAGGGGAGCGGAGGGTTGGCACAGCCAGTGTCCTTCAACCAGTGAAGAAACGCAAAGTGGACATGCCCATCACCGTGTCCTATGCCATCTCAGGGCAGCCAGTGGCCACCGTGCTGGCCATTCCACAAGGCCAGCAACAGAGTTACGTGTCTTTGAGGCCAGACTTACTGACAGTAGACAGTGCCCACCTGTACAGCGCCACTGGGACCATAACTAGCCCTACAGGAGAAACTTGGACCATCCCTGTTTATTCCGCCCAGCCCCGGGGGGACCCTCAGCAGCAGAGCATTACCCACATTGCCATTCCCCAGGAAGCCTACAATGCAGTTCACGTCAGTGGCTCACCCACGGCTCTGGCAGCTGTAAAGCTGGAGGATGACAAGGAGAAGATGGTGGGCACCACATCCGTAGTGAAGAACTCCCATGAAGAGGTAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACATTCCAGTGGCTGTGCAGGCTGTAGCAGGCACGTACCAGAATACGGCTCAGACTGTACATATATGGGACCCACAGCAGCAGCCGCAACAGCAAACTGCACAAGAACAGACACCACCACAGCCACAGCAACAGCAGCAGCTGCAGGTCACTTGTTCA
Seq A exon
GTAAGTAAGACTTAAATCTGTAGAGTGTAACAGAACTCACCTATAGTGTCTGAATTATTTAATTCCATCATGGGGGAGGGAAGAGAGAGAAACAGTAGATGGGGAGGTGGTTATCATTCTTGGAATTCAACAAAATGACCAGTTATTCTTTGTAGTTTTTAGAGCGTGTTTGGGTAAGATGCTATCTTAGTTAGGGTTTACTGCTGTGAGCAGACACCATGACCGAGGCAAATCTTATAAAGGACAACATTTACTTGTGGCTGGCCTACAGGTTCAGAGGCTCAGTCCATTATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCCTGAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAGCTAGGATGAGGGTTGAAAGCCCATGCCCACAGTGACACACCTTGCCTCCTAATAGTGCCACTCCCTGGGACAAGCATATACAAACCATCATATTCTACTGAATATGAATCTGGGGGCCATAGCCTAGCCATAGCATAGTAAGAAAATACATTTAGTTCAACTTCCAAAGCTCCCATAGTCTATAGCAGTCTGAACAGTGTTAAAGTCCTAAGTTCAAAGTCTTCTGAGATCCATCCAATCACTTAACTGTAATCTCCAAAGCAAGACAGGAAACCAGCTGGGCAAACCCCAAACTCTGCATCTCCTTGCCTGGTTTCAAGGTGGACTTCAGATCTCCAACTCCTTTTTCATCTTTGTTGACTGCAACACATTTCTTTTCCTGGGCTGGTTCTACTCCTTGCTAGCAACATTCCTTAGCAGATATCCTGTGGCTCTGGTATTTCAAACATGTTTGGGCCTCCAAGGCACCTTCAGTGTTAAAGCTTCTTGATTTGATACCGGGATCCACACATGATCTTCTGGGTTCCTCCAAATGGTTGGCATCACTTCTCCAGTTCTGCCCTCTGTAGTACTCTAAGCTCAGGTTGATCCACTCCCTGCCGCTGCTGTTCTTGGTGATCATCCCATGGTACTGGCATCTCTACTATGCTGGGTTCTTCACTGCAACTAGGCTTCACCAATAGCCTCTTCATGGTGCCAAGCCTCACATCTTTGCATGGCCCCTTCAGTCCTGGGACATCAACTGCAACCGAGGCTGCACCTTTACCAATGGCCTTCCCTGGCCTCTCAACAGTGCCAAGCCTCAGCTGCTCTCCATGACCCTTTCAGGCCTTTAAAACCAGTACCACCTGGGTGACTCTTACACATTACCAAGTACAGCTGCAGCAGGTGGTGCAACCTGGGCTATCTTTGGAGCACAGCTTCTTTGTGTTCTAAGAAAATACTTCCCAGATTTCACCTCAGTTAAATTTCACCTCACCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAACCAAAAAAAAAAAAAAAAAAAAAAAAATTCACCTCACCACTAATTTCTTAGCTCCAGCTAACCAGCACCAATTGTCCCAGCAGTCCCTTCTGTTGACTCTAAATCCAGAGAGCCACATGGCCAAAGCTGCCGCGTTCTATTACATTATCACTAGCTTTGTTTTCCAACTCTTTCACTGCCTAAGCATATACAGAAGCATACACAAACCATCACAGGTGTCTATACTATTTCTTTGTAATGTCCTGTGATGGTGAGTAGAGTTATGCTATGAAGAGTGGAAGACCCAAAAGTGTTAGGTACTGTTCATGGGTTACTTATACAGCTGTAGTTGAACCATTAACTTAGCACACACAAGTAGTAAATTCCTGATAGAGACCTTGTAAGATAGCTTTTTTTCTTTAGTTATCTTTGAATATGGTATAAATAAATTATAAGAATACCTCTTAGTAGGTCTGTTGAAAGGAGCTGGATGTGAGGGTGTACACCAGCAAAACCTGCACTTGGGAGGCAGAGGCAGGAAGATCACTGAGTGCGGGGGGGGNNNNNNNNNNGGGGGGGGGGCCAACTTGTTCTTAGCAAGTTCCAAGCGGTCCTCGGCTACATAATGATACTTTGTCTAAGAAAACAAAGGTGGGGAAAATGGCAAAAGTAAAATTAGCAACTGGCCCATTGTTGCACATACTTGCATAACACCAATACCTCAGTAAATGAGGCAGCAGGATCTCAGGTTCTTTAGGGTCAGCCCAGGCCACATAGCAAGAATGTCTAAAACAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCCCGACTGCTTTTCCAGAGGTCATGAGTTGGATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTAAAAAAAAAAAAGAATGTCTAAAACAGAACAAGACAGTTTCTTCCATGTTTATATCACTGAATAACTTGTGGGGAAGACAATTAATTGCGAATTGACCCTCAAGAAGAACAGGTGAGAATGTGTTGAACTCCACAATTACAGTGAGTTGGGGAGAGTGGTCCCTTAAAGCCTTCATTCATATTTCCTGTCTTTTAAAACTATATTCCTAGTGAAGCCTTCCTCTTTTGACCTCACTTTCCCCCATCTGTTTCTGACTCTTTCCAGTCTATTTTATTCTCAGTGCTCTAGGCGTTATCCGTAGAGAACGATCTCTACTTTTATCCATTTTTCTGTGGGGGTTTAACTGGCTCTCTTGCCTCAGCCTCTCAATTACTCGAGGCCACATGTGTGTACACTGCTGCATCTGGCTTCAGTTGTGGGTTTTTGTTGTTAAATCTTGTTTTTTCTTTTTTTGTTTGTCTTTTTGAGATGGCTTGTTTGTTTGTTTGTTTGTTTTAATGGCTTCTTTATGTAGCCCTGGCTATCCTGGAGCTCAATCTTAGACCAGGCTGCCCTTGAATTCAGAGATCCACCTCCCTTTGCTTCTGGGATATTAAAGGCGTGGCCACCACTGCTCGGCTGATTGATTTACTTTTATTTATTTTATGTATGTGGGTGTTTGGTCTGTATGTATTTCTCCGCACCATGTGTGAGTATTGCTTGTGTACCCAGAGGAGGATGTAAAATCCTGTAACTGGAGTTACAGATGGCGTGAGCTGCCATGTGGTACTGCAAACTGAATCTGGGTCTTCTGGAAGAGCAGTCAGTGAGGGTTTGGTTGGTTGGTTGGTTGGTTGGTTTTTCGGGGGGGTTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTCAAATAGGGTTTCTCTGTGTGTAGCCTTTGTTGTCCTAGAACATGATCTGTAGACAAGTTGTCATTGAGCACAGTATCTGCCTGCCTCTGAGTCTTGAGTGCTGGGATTAAAGGCATTGGCCACCCTCGAAGCTAGTGTTCTCCAGCCCTGTTACCACAGTTCTTAACTGGGGAAAAGAGCGCTTGTGAACTATTCTTGTACAGAAATGTTAGAAACACAAAAAGGATGCTGGTATGGTAGAGCACATCTGAAATCCTAGCACTTAGGAAAAGGGGGGCAGAGGCAAAGTTCAAGGCCAACATTGGCTACATAGAGTTCTAGGCCAGTGTACAGTACATGAGACCCTGTCTTTAAAAAAAAAAAAGATAGGGCTACGGAGATAGCTCAGTAGTTAACAGCACTGGCTGTTCTTCTACAGGGTCCATTTCAATTCTTAGCATCCTCATTGTGTGTCTTACAACTCCAGCCACACAATGAATCTGACCCTCTTTAGCCTCCAGGGGCACCTACTAACATGTACACATATAAAATATACAGATATACACACATAAACAGCTTTTTAAAAATAAGGGGACTGCAGCGATGGCGCAGCACTTAAGAGCGCTGGCTGCTTTCCCAGAGGACCTGGGTTTGCTTCTCAGTGCTCACATGGTGGTTCAGAACTGTCTTTAATTTGGGTTTCATGGCATCCGTTGCCTTCTGGTGTTAGCCACCCCACCTACTCCCTTAGATTTGTTTTGTTTTGATTTGATTTTAGTTTCCTAAAATAGGCTTTTTTGTGTAGCTTTTTTGGCTGTTGTGGAACTTGCTCTGTATACTAGGCTGGACTAGTAAGACAAGTTATGTTATTTTCATCCAAGGAGACTCATGCAAATACACATCAGACACAACCACTAAAACAGAGTAACCTTTGCTATTTCACAGACCCAGGTATAAACGGAGAGAAGTAAAAACAGAACACAAAGGATTAGGTGTACAAGACAGCGTGGAAATACACTTGTTTTATTTTCAAATTATGGTAGAGCTGAATGTGTGGCTTGATGGTGTGGCACATACATTACACAGACAGAAAAGGTAAAAAGTATATTCAGTAGTGATTACTGACTGACCATGAGCAACTGATAAACTATCATGCTCTATTCTGTTTTTTTCTTTCTGAATATTTTTCCAAAACAAAATTTTGGGAGAGAGGGGGAATCAAGACAGTTTCTTTGTGTTGCACTGGCTGTCCTGGAACTTAAACTGTAGATCAGGCTAGCCTTGAACTCAGAGATCTGCCTGCTTCTGCTTGTGGAAATACCAGGACCAAATCATATGCACATCTTGGAAGGACAAAGAACAGTGGTTCTGCTCGCTTGGTCACTCTTAAAATTTATTCCCCTGAGACAGGTTCTCTTCACTGAACCTAAAGTTCATTATTTTGGGCTAGGATGATCACCAGTGAGTTCCTAGGATTCATCTGTCCCCTGGTCCAGTGTTGAAGTTCCAGACATTCTTGGCCATGCCTGCCATTATTTATGGGTGCTGGGTTATCTCCCCAGCCCCTCTTTTCGTTCTTCAATTTTATTTTATGTGTACGGGTGTATTCCCTACATGCATGTCTGTTCACACACTATGTGTCTGCCTGATAGTTTTAAGATTCTTAAAGAAAGGCAGGACATGGTGGTGCACACTTTTAATCCCAGCATTCAGGAGGCAGAGGCAGGAGGAAAACCTCTGTGAGTCAAAGCCCCTCTGGTCTACATACTGAGTTAAGGGAGAGCCAGGACTATAGAGAGACCCAATCTCAGTCAGTGTGTGAGTGTGAGTGTGAGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCAGACACACACACACACACAGTTGGGCATGGTGGTGCACACCTTTAATCCCAGCACTTGAGGCAGAATCTGGCGAATCTCTTGAGTTTGAGGCCAGCCTGTGTACTGAGAGAGAGAGAGAGAGAGAGAGAGAATATATGAATATGGATGAATATATATTGAATATGAAAGAATGAAAGTGGATTATGTTCTTAGGGGTGAGAATATGGGTTTGAACTTTATGCTAGTATGGTGTCACGTGCATGTAGTTTCAGAACCACTTAGGAGGCTAAAGGGGGGGGGGATCACAAGTTTGTTTTTTTTTTTTTTTTCTTTTCCTCTGGAGCTGAGGACCGAACACAGGGTCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAACTAAATCCCCAACCCCTGGGATCACAAGTTTAAGGTCAGTCTGAACCTGTTCTGTGTGAAAAAATACAAGGATTTTATAAGCTGGAAAATGACCATGAAGATTCTGAAGTCTTACCTTTGATTGTTTTACAATGGCAACCTTTTGTCTTACTTGTCTTTGTAAATGGTTGTTCTAGACTAAAATAATCTCCGGGAACCCCCCCCCCCCCCCCCGCCCTCCCGCCCAAGCTCCTCCATGCTGGGATTATAGGCATATCATTCCCACCTCAGCAGGAAAACTTCTTTGGGATGGGGGTTTTCCTAAACTTGCTATTAGTTCAGGGTGACCCTTTGCTTCTACTTCTACAGCCTCTGCCTTTGCATTTCTTGGATTGCAGATGGGAGGAGCTACCATATGCAGACTCCCAAGGTGCTGGACACTGCCTCTGGGGTATTGCACTCACCACTGCTCCAGCTTTGCTGGTGTGGATTGCAGTCCCTCCTCATAGAGGGTCACTCAGATCATAGTCTGGGAGTAGAACTTTCTCAGGTTCCAACCCAGATGTGTTCAGTCGCTTTATACACATCTTAATAAAGTGCCTAAGTGTTTTATTTGCATAGTGAAGTTTTGAAGCAGTGTTTGAAAATAAACCTCTATTTACTTAGGAAGTTGTTTGTTTTTCTAGAGTGTTTTACTGTGTATCCTTGGCTGTCTGGAAATCCAACTGTCACTGCCTCCTGAATGCTGGAGTTAAAGGCGTGTGCCACCACTGCCTGGCTTACTTAGGGAGTTTTAAAAAGATTGATACTTGGCCTCTGCCCTTTGAGAGGTTCTAGGGCATTTTGTACTATTGGTGTTGTAGGGTTTTTTTTTTTTTTTTTTTCTTTGTGTTTCTTTTTGGCAGGGTGTGGTTCCAGATAGGGTTTCCAGATAGCTCTGGCTGTCCTGGAACTCATTTTGAATTTGAACTTATAAAGATCCCCCTGCTTCTGCCTCCTGAGTGCTGGGAATAAAGATGGGCACCACCACTGCCCAGCTCCTTTTTCTTTTCTTTGTTTTTGAGACCAACTCCTACGTCCTGGCTGGCCTTGGATTTGCCATAAAGCTCGGACTGGTCTCAAACTTGAGGGCGCTCTGTACCCTGCCTGAGCCTCTGAAGTACTGGTAGTGCAGTCATGTTCTGCCATCCTTGGTTTATATTGGTGTTTTGAAACGAGAATCAAGAGCTAGCATGATGGCTTAGTGGGTAGCAGCACTTGTTCCAAGCCTGACATCCTGAATTCAGTCCATTCAGTCACTCAGAACCATCTAGTAGAAAGAGAAGTGGCTTCCACGAGTTTTCTGACCTCCACAGGCCCATCAGTGACATACATGTACCCACACACTTCACATGCACATTCATAACAGTTCCGAATGTCATAAACATGTTCAGTGAGAACTCGGTACAGTCTGAGCGGAGGAGTGCTGCACTGACTTAGTTACATTGCTACCTTTGATGTCCCTGTAACCAGATAAATTCTGCAAAGCATGAAAACAAGACAGCAAGAAGAGTTGGTTTGGGTGGTTGGTATTGTTTTCCCAAGTGAATAAGCAGTTAAGTTTGGTTTTCTGGTATTTTTTTTACTAAAGGTCCTAATGAAAAATATTGACAGTCTGATGGTTTCCCTCTCATAG
Seq C2 exon
GCACAAACTGTTCAGGTCGCTGAAGTTGAGCCACAGTCACAACCGCAGCCTTCACCAGAGCTTTTGCTTCCAAATTCACTGAAGCCAGAAGAAGGGCTAGAAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGATGCTCAAAACAGATTGGCCCCCATTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]