DreINT0123189 @ danRer10
Intron Retention
Gene
ENSDARG00000019797 | qrich1
Description
glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
Coordinates
chr11:17872640-17876181:-
Coord C1 exon
chr11:17875468-17876181
Coord A exon
chr11:17872800-17875467
Coord C2 exon
chr11:17872640-17872799
Length
2668 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TGATGTTCTGTGTTTTTCAGGCG
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATCCAGGCTCAGCTGGTGGCAGCAGTTGCCGGAGGTCAGCAGATTCAGATCCAAACAGTGGAGGCTCTGTCCCCTCAGCAGCAGGGTTCCCCCAGGGAAGTGGACCGACGAACTGGAGCCTCGCCTGCCGTCCTCCAGCCTGCAAAGAAACGCAAGGTGGACGTCCCTACAGTTGTGTCCTACTCGCTCCCTCAAGGGCAGCAGCTGGCTACCGTATTGGCCATACCGCAGGGCCAACAGCAGGGCTACTTGTCACTTCGACCAGACCTGCTGACCGTTGACAGCACTCACCTCTACAGTGCCACTGGTACCATCACAGGCCCGGCCGGCGAGACCTGGACCATACCCGTGTACTCTGCCCCACAGCAGCAAGGTGTGGCCCACATCGCCATCCCACAAGAGGCCTACAGCACCGTGCAGGTCCAGGCCTCGCCAACCGATAAAGACAAAGACAAGATGATTATCGGTGCATCTCAGGCTGCAGGGGCAGTGGCAGTTCCAGTGTCCAGCTCAGGAGTGACCACTCAGGAGGAAGTTGTACATTCACTGTTTCCTGCGCAGTTTATGAATGGAAACATTCACATCCCTGTCGCCGTGCAGACTGTAGGGGGCGCTTATTCTGGAACAACGCAGGCCCTGCATATATGGGATCCACAACAACAGCAGCAGCACGTGCAGGATGGAGAAGTACAGGAACAACAGCTCCATCTGCAG
Seq A exon
GTGAATACAGCACTCTTGCTTGTTTAAAGAGATACTTGAACCAAAAATCTTGAATGTTCTCTCATCAATTGCTAGCCTCTGCCTAATCCAATCCTTTAAGAGTTTCTTTATTCTAAAGAACAAAAAGCATCATATTTTGAAGATATATGTGTATTGTCCCCATTGACTACCGTAGTATTGAGGGCTTGGAGATTTGGCCTAAAACCAAAATCTTATTTAGTTGAACATTTTAACTCTAATGTGATTAATGATTGATTATTTTATTGATTTATTTGATTTTTTTGCTCTCACAGTTCATGGACAAGTTTTGTATATTAAATATGCTCACATTTTACAAGTGAGAGATTTTTGAATGAAGGGTGAATTACTTAAGAATAATTGAAGGAAACACACACTATCTACAATCTCTGATTATTTACTAAATGTCAACGATAAACAACTAAAATTAAAGCACACATTGCCTAAAGAACTTGCAATTATGGAAACAAAGAAATTTTTTCAGGGTTTTTCATTTTAAAAGTAGAAAATAAGCAGTAGCTCTTCTAAATAAAATAAAATAAAAGGATAAAATGCAAATCCTGTAGATAACATTTTTAACATTTTTATCTTCTGCTAACAAATATTTTAATGTAAAAAATAATCTCTGGCGCAGCCTTAATGTAGTGCAAAGTAAGACTTAGGGTGCTTTCACATCTGTAGTTCGCTTCAGTTGGTCTGGACCAAGGGCAATAAATGATACATTGTTGCATTTTCTGCCGTCTTTGGGTCGTTTTCACACCACACTGCTGGCTTTGGTCCGAACCAGTTGAAACGAACCAAAATGCAGTAATCTGACAAAATCCACATCTCTCATTGGCCAAATGTTGTTGAACATATTTCCTAAATCGCTTATTGATTGGTCGGAATTCACGTGCGGGGAAAATGCCAATGAACTACCGCAAGTAAACAAAACCGGCAGACACAAAATGTTGTTTTTATTCTTGAGGGAAACTACACATTTTGAGAATGAAGCACGGCCGCGGCTGGAAAACAGGGTTTTAATGCATCGCTCGTCACATCAGGAGGAGGCGTGAAATTAATTAGCTAAACTGTGACATGGTCATCTTGCGGAAATATCGCCAACGATCCATCAGGTAATGTTTTCCCCTCTCTCTCTGTTGGTAAAGCGCTGTCAACAAATATTTTCCTCCATATACCATAATGCACAGCGCTTCGGCCTAAGGCAGCTGGATTAGTCCAAGAGGCACAGTACTTATTGCGATTGGACCTGTTTTAGTACGGATCATATTCTCACCACAAATGAACCGCTCCAGGGTTCGTTTGAAAGCGAACCGAGACCACCTCTTCAAGCAGGTCTCGGTACGCTTATTTTGTCCGCTTTCGGTGCACACTCGAGTACGATTGCTGCATTCTCACCTGCCCAAACGAACCGCACCAAAAGGGGTAACGAACTCTAGTGCGATTCAATCAAACTAAATAAGGCAGGTGTGAAAGCACCCTCAAAAATGGGTCCATTGTCCTACTTGACCAGAGATGTGGCTGCAAAGTGGCAGCAGTAGTATAAATCAGCCTTTAACAGAGTTGGGTCATTTGACTCCACATGTGGTATGGAAAGTGATTAAAAAATTTGTCCTGGAAAATTTTGATCGATTATAGGTTCTAATTGTCAATTTTGTTTAATTTTCGATTAATCACTCTGCCCTAATAGTTTTTCCCCCATAGTATTGAAGTCAGTGGTGATTTACATTTTGGTTTTCTGCATGTCTTCTTTTATTTTCAGCAAAAAATGCTCACACTGTACAATAAGATTGTGTTAATGTATTAATTAACATGAACAAATAATGAACAATACATTTACTAGAGTGTTTGTACTTTGTTATTATTAGCTAATAAAAATAAAGTTGTTCATTGTTAGTTCATGTTAACTCGCAATAGGCATGGGCTGGTATAAGATTCTGACGGTATGATAACCTTGGATAAAAATATCACGGTTTCACTGTATTGTGATTACTGCTCTGAAATATATTATTTTAAAATGTTTGGATTAAAAACCAAACTGCTTTTCCATTTGAACACAATATATTTTATTTTGAGAAACATAAAGATAATTTGGAGCAGTAGCTAAACATGTCAGGCTAAATAATTCAAATAAATCATTGACTTCTGCTGTTCTTATTTGTTTTAAAAACACAGATTTCTTTACAATTTAAAAGGGTAGTATACAATTTAAAAATAGTATACATACCTTAGGAATGGAATAGCAGAAATTTTTTACAGTTTTAAAACTTTAAAAAAAAAAAAAAAGTCTTTTTAAGACTTTTCCAAACCGCGTATACTTTGAAAACAATTATCGTCCGATGCTCACAAGGCTCACAAGGCTTTAAATAATGTTAACACGCACAAGGTTGGAATTTAATAATGCTTAAGTAACTGTTAGACTATGATTAATAAATGCTGTACTAGTAATGTTCATTTCTAATTCATGTTAGTAAATACATTAATGAAACAAACCTTTTAAAAAATGTTTAGAACAAGTTTGTAGAGTAAATATTTTTTTGGGATGAAATATCTCTTTAAATATTTAAAGCTCATGTGTATTTAACCATAGTGAAGATGCTTATTTCTTGTTTAGCAATATGCTGAGATACTGATGTTCTGTGTTTTTCAG
Seq C2 exon
GCGCAGACCGAGGCAGAGCCACAGGTAGAGCCTCCTCCTGAGCTGGTCCTCCCAAACACGCTGAAGCCTGAGGACGGGCTAGAGGTCTGGAGGCTTTGGGTTCAGCGCAAAAATGCTGAGCTGGACAAAAATGAACAAAATAAGCTGGCACCTATTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019797:ENSDART00000040171:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]