BtaINT0121004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018924 | QRICH1
Description
Bos taurus glutamine-rich 1 (QRICH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098015]
Coordinates
chr22:51525356-51526733:+
Coord C1 exon
chr22:51525356-51525510
Coord A exon
chr22:51525511-51526618
Coord C2 exon
chr22:51526619-51526733
Length
1108 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATTGATTATTTTCCTTTTAGTAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GGCGTCAGTTGCTACGATTCCAGGAAGATCTCATCTCTTCTGCTGTGGCTGAGTTGAATTATGGGCTCTGTCTGATGACACGGGAAGCTCGAAATGGAGAAGGTGAACCCTATGACCCAGATGTGCTGTACTATATTTTCCTGTGTATTCAAAAG
Seq A exon
GTAGGAAACAGCTTCATAGGAACCTGTTTGCCTTGTGTTCCCATTGGGTATTTGCTGTGTAGTCAAATTAGAAGTGGTAACAATAAAGATACTCTCTTCCAACTATATAATGAGGTTTTAAATGTACATTTTTTAAAAATTGGAAATGTTTTTAAATGTGTTTTTTTTTTAGATTGGAAAAGATCTACATGTTCACTTTAGAAAGTCAGATAATAAAATAATCCCTCAATCTGGAGAAATGTTTGTTAAAATATGATATTTTTTTAAAAATCATGAAACATTTATGTAACACTTTTTGTTAAACATCTAGTTTGCAGGAAAGCAATTCTCCCAGAACAGTCTGGTGCTGACATATAGTTCATTTTCTCATTGTTTCCTGCATTAATGCAAAATAATTATTTGAAAGAGTCTAGCTAGACTATACAACTGTAGTTAGGTTTTCAAGATATCTAAGATGAAGATGAACAGGGAGATTCATTTTAGGACCAGCAGTGTCAGAGACCAGATGGGGATTTCCTAGTGTTTGAATGCTATTGTAGAGAAGCCCACGGTGTAATGGAAGAACACTTGCTGACTGGGACTCACCCTGTTGCTGAGGCCTGAGAAAAACCCATCTCCCATTTTGTTACTCTTTCTTAGCAGTCACTGGGAGCACTGGGTGAATTACGGTATATGCTTTGTCTCATTCCATGCTCTCTTACTCATGCAAGGCAGGCATAGTCCTCTCCATTTACAAACAAGGAAACTGAGCCCCCAAAGTTACAAGACTCACATGAGTTACATAACTTAACCATAGCTAGTAAGAGACTGGCCCTGGAGCCTGCATCATGTTTTTTTGCTATCATAAGACAGTGCCTTTCTTGGGTGAAGTAGCATTCACGAAATCTGCTCCATTGGCCAACTTTCAAGAGTGTTGTGAGAGTTAGTTCCCATCCTGAAGTATGCTGTGGAAGTACTGTGCACTGGGCGGTTTTGACTCAGTGTGCTGGTTTGTTAATGGGGGACGAATGGGTAGGGACATGTGAGGGTACTGCTCGAAAATTATTTGCTTCCCTCAACATCTTGTTAAGAGTCTACCAACAGCTTTTATTGATTATTTTCCTTTTAG
Seq C2 exon
TATCTTTTTGAGAATGGACGGGTTGATGACATTTTCTCCGATCTTTATTATGTTCGATTTACGGAGTGGCTGCATGAAGTTCTGAAGGACGTTCAGCCCCGAGTCACTCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018924:ENSBTAT00000025183:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCAGTTGCTACGATTCC
R:
CAAGTGGAGTGACTCGGGGC
Band lengths:
270-1378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]