DreINT0123191 @ danRer10
Intron Retention
Gene
ENSDARG00000019797 | qrich1
Description
glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
Coordinates
chr11:17870571-17870924:-
Coord C1 exon
chr11:17870770-17870924
Coord A exon
chr11:17870686-17870769
Coord C2 exon
chr11:17870571-17870685
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTCTTTTTTCCCTACTATAGTAC
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTCGACAGCCGCTGCGCTTCCAGGACGATCTTGTGTCGAGTTCAGTGGGAGAGTTGAACCTGGCTCTGTCCCTGATGACTCAAGAGGCCCGTGGGCTGGAGGGAGAGCTGTTCGAACCCGATTCATTATACTATGTATTTTTATGTATACAGAAA
Seq A exon
GTATGTCAGATTACTCGTAGTCTTTTTGTAATACAGATTCTGTTTAGTTTGCTTAAGCTAATTTTTCTTTTTTCCCTACTATAG
Seq C2 exon
TACATGTTTGAGAACGGCAGAGTAGACGACATCTTCTCTGATCAGTACTATAGCCGCTTCTGTCAGTGTTTACACAAAATTTTGGAGGAGTGGAGGCCCAGTATTCATCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019797:ENSDART00000040171:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGACGATCTTGTGTCGA
R:
TGTCGTCTACTCTGCCGTTCT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]