RnoINT0121233 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117332946-117334586:+
Coord C1 exon
chr8:117332946-117333100
Coord A exon
chr8:117333101-117334471
Coord C2 exon
chr8:117334472-117334586
Length
1371 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTTAATTACTTTTCTTTTAGTAT
3' ss Score
5.73
Exon sequences
Seq C1 exon
GGCGCCAGTTGCTACGATTCCAAGAAGATCTGATCTCATCTGCTGTGGCTGAATTGAATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGAACCCTATGACCCAGATGTACTCTACTACATTTTCTTGTGTATACAGAAG
Seq A exon
GTAGGAAACAGATCTTCACATAAACATATTTGAACTGGAGTCCCACTGAATGTTTTCACTTTAGCATAGTTTGCTTAAATGACAAGATGTGAAGAAAAACTGGTGGCACAGCTTTAACCCAGCGTGTGGTGGCAGAGACAGGCTGGCCTTTGAGTTCCTGCTGGCCAAGCCCACGTAGATCCTGACATTTGTTTGAGTTTTGTTGAGACAGGAAATCTCTGCATACCCTTGGCTGTCCTGGAACCCAGAGATCAGCTTGGTTCTGCCTCTTAAGTCCTTTGATTAAAGGTATACACCACCATTGCCCGATTTATTTATTTATTTTTTTCCGGAGCTGAGGACCGAACCCAGGGCCTTGAGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCACCCCCACCCCCACCCCCTTTTTGTAAATAAAGGCTTAGATGTTTACTCTAGAAAAGAATATATACAAGGATGCCTAATTCTGAGAGAAGTCAGCCTCCTTTCATCCCTTTTTTCTTCTGATCCTAACCCATAACTACCTGACTTATTTTATGTGATGTCTCTATTCACAGAAGGCTGCTGTAGTATTGTAATCTCCCTTTACAAAAAAGGAAATTAAAAGATTTGCATGTGCTAGGGCTGGAGAGAGATAATTCAGCGGTTAAGAATACTTACTGCTCTTACAGGACCTGTGTTCAGTTTCCAGCATCCACATGGTCGTTCATACCCATCCCTAACTTTTGTTCTAGGAGATCCAGTGCTTTCTTCTAACATCTAAGGGTACCAAACATATATGCAGAGATACTCACCATACATAAATCTAAACAAAATTAAAACTGAACACAGTACCCTGCCTTTAATCCCAGCACAGGGGTAGAGGTGGGTGGGTGGGTGTTGTGCAGAGGCTGATAGATCTCGGTTCAATTCCTGCTCTTTCTACTTTGTGAGTTTTTGAGTCATTTTATTTTATGTGTGTGTGAGTAGGCATGAACAACTACAGGCAATCGTGGCTACATGGATGTTAGAAACTGAGTCTCGTCTTCTCTAGGAGCTGTTGTGTTCTTAACTGCTGAGCCATATCTCTATTTCCCTCCCCCATGGTTTTGACTACAGGGCCTTGCTTATGTGGGATAGTATTCACGAAAGATCCCTTGTTGGCTCAGCTCTCAGGAACATAAGAATCTGCTCGTGTAATTTAAGGTGTGCTATGGAAATGACACAAGCTGGACAGTTCTGACTTAACTACTTTTTTGTTGTTAGAGAGAATGGGTAGGGTAAGGCGGTGGTGTTGGTGGTGGTAAAAAAATGTTTTGTTTTCCTAAAGGCTTTGCTCAAGAGACTACCTGTAACATTTGTTAATTACTTTTCTTTTAG
Seq C2 exon
TATCTTTTTGAAAATGGAAGAGTAGATGACATATTCTCTGATCTTTACTATGTTCGTTTTACCGAATGGCTACATGAAGTTCTGAAGGACGTGCAGCCCCGGGTCACTCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCAGTTGCTACGATTC
R:
CAAGTGGAGTGACCCGGGG
Band lengths:
270-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]