HsaINT0135759 @ hg38
Intron Retention
Gene
ENSG00000198218 | QRICH1
Description
glutamine rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr3:49044390-49046579:-
Coord C1 exon
chr3:49046425-49046579
Coord A exon
chr3:49044505-49046424
Coord C2 exon
chr3:49044390-49044504
Length
1920 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATTAATTGTTTTTCTTTTAGTAT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGCGCCAACTGCTGCGATTCCAGGAAGATCTCATCTCCTCTGCTGTGGCAGAGTTGAATTATGGGCTCTGTCTAATGACACGGGAAGCTCGAAATGGAGAAGGTGAACCCTATGACCCAGATGTGCTCTACTATATTTTCCTGTGTATTCAAAAG
Seq A exon
GTAGGAAACAGATCTTCACAAGAACATGTTTGAGCTGTGTTCCTATTGGATGTTTGCTAGTTTAGTTAATAAATTGATAAGCAAGAAGTTAAAATAAGGAAGTTCTCTTTCAGGTATACAGTGAGTTTTAAAATACACATTTGTTGTTTTTTTTTTTTTTTTAAGTTTTAAAAACCTACACGTTCACTTTAGAAAATAACAGCCGGGGCCGGGCGCTGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCAGGTGGATCACTTGAGGTCAGGAGTTGAAGACGACCAGCCCAGCCAACATGGTGAAACCCCATCCACTAAAAATAGAAAAATTTGCCAGGTGTGGTGGTGCACTGCCTATAATCCCTGCTATTTGGGAGGCTGAGGCATGAGAATCGCTTGAACCCGGGAGGTAGAGGTTGCAATGAGCTGAGATCACAGCATTTTACTCCAGTCTGGGTGACAGAGCGAGACTCTGTCTCAAAAATTAAAAAAAAAAGAAAAGAAAAGAAAAAAAATAAGAGCCAGGCAAGATGTCTCACACCTGTAATCCCAGCACTTTGGGAGGCTCAAGGCAGGAGGATCGCTTGAGCCCCAGGAGTTTGAGACCAGCCTAGGCAACATAGTGAAACCCCATCTCTACAAAAAATTAGCTGGGTATGGTAATGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCCAGAGGTTGGGGCTGTAGTGAGTCATGATTATGTCACTACACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTGAAAAACGAAAAGAAAAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCTCAGGAGTGCGAGGCTGCATTCAGCTATGATTGTGCCATCACACTTCAATCTGGTCTACAAAGCAAGACCTTGCCTCTTAAAAAATAAATACATAAAATAAATAATAAAATAGGAAAACAAACATTATTCATCCTACTACCTAAACTTCTATTACATTATTGGTAATTACCTTGACTTTTTTTTTTTTTTTTTTTTTTTGTAATTCACAAAGCATTTATGTAACACTTTTCTTTTTGTTAAACCTGATTTTCATGAAGGTAATTTATTCAAAACAGAGTCTTGTGCCAGCATAGAGGTTTTCTTCTCATTGTTCCCTGCACTAACTACTTATTTGAAGGAGTCTAGCTAGAATAATATACCAATGTAGTTAGGTTTTCAGGACATCTGTGGTGAAGCATAACAGAAATTTGCAGACTGGCAGTTCAAGGGAGCAGAGGTGGATTTCTTAGTGTTTGAAGGCTCTTGAGGAGAAACCCACAGTATAATAGAATAGGGCTTACTGGTTGGGACTTATTCTGTTGCCTAGTCTTGAGAAATGTCTGCCTCCTAGTTTTTTCCTCTCTTGGTGGTCCTAACCTAAGTACTATGTGAATTGCTTTACATGCTTTCATTCTTTGCTCTCCCAGTCCTGGAAGGCAGATACCATCATCTCCATTTACAGGCAAGGAAACTGAGTCTCAGAAATTAAAAGACTTGCACATGTTGTTTAACTTATACAATATCTAATGGAAGGCTGACCCCAGAGCCTATTCATGATTTTTGCTAACACAAAATAATGCCTTTCTTGGGTGAAATAGCATTCACAACATCTGCCTTATTTACCCAACTCTCAAGAATGTCATGAGAATCAGTCACATGAGCTTAGGCATACTATGGAAGTGTCACATGCTGGTGCCTTGGTTTGTTGAGGTGTGAATGGGTAGGGAAGGATAGTAGTACTGGTAGAAAAATATATTTATTTCCCCTGAAATCCTTGTTCAGGAGACTACCAATAACTTCTATTAATTGTTTTTCTTTTAG
Seq C2 exon
TATCTTTTTGAAAATGGAAGGGTAGATGACATTTTCTCCGATCTTTATTATGTTCGGTTCACGGAGTGGCTACATGAAGTTCTGAAGGATGTTCAGCCCCGGGTCACTCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218:ENST00000395443:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTGCGATTCCAGGAAG
R:
AAGTGGAGTGACCCGGGG
Band lengths:
263-2183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development