GgaINT0020309 @ galGal4
Intron Retention
Gene
ENSGALG00000006867 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr12:11603904-11604941:+
Coord C1 exon
chr12:11603904-11604058
Coord A exon
chr12:11604059-11604826
Coord C2 exon
chr12:11604827-11604941
Length
768 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GTGTTGTGAATCTTTTGCAGTAT
3' ss Score
7.09
Exon sequences
Seq C1 exon
GACGTCAGCTGCTGAGGTTCCAGGAAGATCTCATATCTTCAGCTGTGGCTGAGCTGAATTATGGTCTATGTTTAATGACACGAGAAGCACGGAATGGTGATGGTGAACCGTATGATCCAGATGTGCTCTATTATATCTTCCTGTGTATTCAGAAG
Seq A exon
GTAGGGGGAGGACAGTTCTATGCGCAGCAGAGCTGTGCGTCTTGTCAGAATATACAGGGAGGATTCTCCTTTATAAGAAGGGAGACTTGCTTCTAATGAGCTTCCCAGAGATTTCATAAGAATAAAGTCTTTGCTTCTTCAGTATAAGAAGGAAAAAGATGCACTGACTAAATGTAATTGATAAACAGCAACGTGCTTCTTTTTTTCCTGAAGTAATTTATGAAGAATTGCTAGTATGAGTTCAGTGTAATGAAGAAGTCCTTTTAAGTTCCTCTTTTGGGAGGAGGGAGGAGCAGGGGATGATGTTTGAGAAATCAATGAAGACTTGATCTAGCTGAAGCTTTAACAGGCAAAAATTTAGCTTTTTATGGCGTGGGAAGTCTGAACTGGTAATGTCAGTATGCTTCCTGGAAGAGCTGCAGGAACAGAACTAAACTGATAGGAGAATTGGCATCTACCTCCTTATCTGAAGGAGTCTAAAGTCCACAGGACAGTCATGTGAATTAACTTCCAATGGACACATCTAAAATACGAGATGAACTCCAACCAACTTTGCTGGCTGTCTCTCCTTCCTGTCTTTGCATTCCCCTGATAGTAACTGAGATTATTTGTTCTCAGTGCAGGGGTCCTCGCTTCCCTAGGTAGTATGTATTAGTCTTCAGTGCTGTGAAGTGTTTGAGTAACCGGGTGTGTGGGCTCTTAGGATAAAATCTTGTTTGAGAGGAACATGCTATCACTGTACTGGACTGTGTTGTGAATCTTTTGCAG
Seq C2 exon
TATCTCTTTGAAAATGGGCGAGTAGATGACATCTTCTCGGATCTCTACTATATTCGCTTCACTGAATGGCTGCATGAGGTTCTCAAGGATGTACAGCCTCGTGTTTCCCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867:ENSGALT00000011121:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTGCTGAGGTTCCAG
R:
GGGGAAACACGAGGCTGTACA
Band lengths:
262-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]