BtaINT0121006 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018924 | QRICH1
Description
Bos taurus glutamine-rich 1 (QRICH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098015]
Coordinates
chr22:51531649-51532265:+
Coord C1 exon
chr22:51531649-51531757
Coord A exon
chr22:51531758-51532113
Coord C2 exon
chr22:51532114-51532265
Length
356 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGCTTTCGCTTGTGGTGCAGATA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GCTATGTCCTGCCCAGCCACGTGACTGAGGAGATGCTGTGGGAGTGCAAGCAGCTCGGGGCTCACTCCCCTTCCACCTTGCTGACCACCCTCATGTTCTTTAACACCAA
Seq A exon
GTAAGTGTTCCAGAGGCTCCATGCTTAGCCAGTGCTAGCATCTGCCCAGTGAAGAGGGTAGAAACTATCCAGATGGACTTCTGAGATCCTTTGACATGCTTGAGAGCCTTTGGGCTAGTGAAGCCCTCCACCCCACTTGGCTACATTTTGTGTGGTGACCAGTAAGGCAGACAGCCTTGCCAGGTCCCTACCATCAGTCCTTATGAGACTCCTCCACTGGAGAGTGTATTTGGGTGTGGGCCTGCCCAGATTGTGGGAATGTGGGCAGCAGCTCCTCTGAAGCACCGATGGCGGAGGGTAAGTCATGGTCTCCTCCTGGCACCCCTCCCTTTGCCTTGCTTTCGCTTGTGGTGCAG
Seq C2 exon
ATACTTCCTGTTGAAGACAGTGGACCAGCACATGAAGCTGGCCTTCTCCAAGGTCTTACGACAGACAAAGAAGAACCCCTCTAATCCCAAGGATAAAAGCACGAGTATTCGGTACCTGAAGGCACTTGGGATACACCAGACTGGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018924:ENSBTAT00000025183:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(21.8=97.3)
A:
NA
C2:
PF120123=DUF3504=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTCCTGCCCAGCCAC
R:
TCTGGCCAGTCTGGTGTATCC
Band lengths:
257-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]